Non-Coding RNA Search

Ss1.1-Thy1-THY010017H04.5

Sequence:


               
               CATTGTTCTAGAAGACACATCACCAGGGCTAGCAGAGTAGACAGTCCATTAACTGGATGG
ATTCAAACCCCTAACTATTATTGGCACAACAGGAAGTTTAATTGTGTCCCCAAAGCACAC
GCTTTTCAGACAACGTGTTGCAAGTATCTACCATGTGGCAGGCACTATGTTAAATCTCTC
CTAACAGCATCCTTAATATGCTCTAACATATCCAGTGTATGAGGCCACAATGCTCTTACG
TGGTACTGGTGCAAAGTACAGTCAGTGTCAAAAATAAGTGGCAGAGCCAACACAAGAGAG
ACTTACGAATTCAGGGTCCAGACATAGAGGCAAGTCATCTATAGTCAAAGGAAAAGTCTC
AAGAGGAATGAGTTGCCCCCAGAAGAGTGTCCAACTTTGTTTGAAACAGAGCCTTTGCCT
GCCACCCACCACCTCTACCCCAAACAAATTATCATTTCTGGAAAAGTACTTGCCTCACAG
GTAACAGTCAGCAGATGGAAAACCGACTTAGCAATTGAATGTCAGGTTATCCTACAATTG
TGTGCCCGAAGGAACCACACACGTGGCTTGGTGTCTCTGTGTCCTGTGTTACAGAAAGTG
TGGCCAGGGGGACGAAAGCTGAAGTCCAGCCTGCTCTCGTTCATGCTTTCGTGGAGCTTC
CCAAAACGGCACTCTTTCCCTGGGTCTGCCTCCCATAAACTCCGTTCTTCAATGCACTCG
TTTTCTTCGTGAATTTTCTCCCTGCTCTTCTAAAGGAGGAGTCAAGCTTTCTGAAATGCG
TGAATTCACCCTTTGGGGGCCACTCCTGGCTGAACAACTCACTGTGCTGGCAACTCATTT
AGTTCCTCAGTTCTAAATACCTTGTCGCAACCATTCATCCTAAGACAGCACTTTGTGCTA
AAGAAAAAGCCCAGGATGACTGGGAAAAGAGATGCGGGGGAGGGAGGGCACCAGTGCTAC
TGAGCCATCCTTTCGTTATGGACAGCATCTGCCTCTCGCACTATCCCTGTGTTTTTCTGT
TAAGTAGCTTTTATTTTCTGTGGAAGGTGCTGATGTCTTTAGGGAACATCTGTTTTATCT
GTCTGCCCAAGAGTGAAAGCAAAATACTCCACACAAAGCATGATAAACAACTACCTGGTT
CTTCCAATGCTTAGGAAAGAAATCCCCTCATAAATCTTCAGCTCTTATTGCATTAGATCA
AATCCCACTTGGAACGACTGTTTTGCATACCTTAACCTGATCTATTCAAAACGTTGGTTA
AAAAAGCTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGTTCTAGAAGACACATCACCAGGGCTAGCAGAGTAGACAGTCCATTAACTGGATGG
ATTCAAACCCCTAACTATTATTGGCACAACAGGAAGTTTAATTGTGTCCCCAAAGCACAC
GCTTTTCAGACAACGTGTTGCAAGTATCTACCATGTGGCAGGCACTATGTTAAATCTCTC
CTAACAGCATCCTTAATATGCTCTAACATATCCAGTGTATGAGGCCACAATGCTCTTACG
TGGTACTGGTGCAAAGTACAGTCAGTGTCAAAAATAAGTGGCAGAGCCAACACAAGAGAG
ACTTACGAATTCAGGGTCCAGACATAGAGGCAAGTCATCTATAGTCAAAGGAAAAGTCTC
AAGAGGAATGAGTTGCCCCCAGAAGAGTGTCCAACTTTGTTTGAAACAGAGCCTTTGCCT
GCCACCCACCACCTCTACCCCAAACAAATTATCATTTCTGGAAAAGTACTTGCCTCACAG
GTAACAGTCAGCAGATGGAAAACCGACTTAGCAATTGAATGTCAGGTTATCCTACAATTG
TGTGCCCGAAGGAACCACACACGTGGCTTGGTGTCTCTGTGTCCTGTGTTACAGAAAGTG
TGGCCAGGGGGACGAAAGCTGAAGTCCAGCCTGCTCTCGTTCATGCTTTCGTGGAGCTTC
CCAAAACGGCACTCTTTCCCTGGGTCTGCCTCCCATAAACTCCGTTCTTCAATGCACTCG
TTTTCTTCGTGAATTTTCTCCCTGCTCTTCTAAAGGAGGAGTCAAGCTTTCTGAAATGCG
TGAATTCACCCTTTGGGGGCCACTCCTGGCTGAACAACTCACTGTGCTGGCAACTCATTT
AGTTCCTCAGTTCTAAATACCTTGTCGCAACCATTCATCCTAAGACAGCACTTTGTGCTA
AAGAAAAAGCCCAGGATGACTGGGAAAAGAGATGCGGGGGAGGGAGGGCACCAGTGCTAC
TGAGCCATCCTTTCGTTATGGACAGCATCTGCCTCTCGCACTATCCCTGTGTTTTTCTGT
TAAGTAGCTTTTATTTTCTGTGGAAGGTGCTGATGTCTTTAGGGAACATCTGTTTTATCT
GTCTGCCCAAGAGTGAAAGCAAAATACTCCACACAAAGCATGATAAACAACTACCTGGTT
CTTCCAATGCTTAGGAAAGAAATCCCCTCATAAATCTTCAGCTCTTATTGCATTAGATCA
AATCCCACTTGGAACGACTGTTTTGCATACCTTAACCTGATCTATTCAAAACGTTGGTTA
AAAAAGCTGCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               49-167, - strand, RNAz p=0.707914

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               49-167, - strand, RNAz p=0.707914

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-488, gnl|bosTau2|chr1 (95797104-95797572)
               

               
               11-488, gnl|Hg17|chr21 (35222001-35221585)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-488, gnl|bosTau2|chr1 (95797104-95797572)
               

               
               11-488, gnl|Hg17|chr21 (35222001-35221585)

	11-488, gnl\|bosTau2\|chr1 (95797104-95797572)
	11-488, gnl\|Hg17\|chr21 (35222001-35221585)