Non-Coding RNA Search

Ss1.1-Thy1-THY010018E08.5

Sequence:


               
               TAATGAATTGTGTAAATTTTCTAACATACCTGGTAGTAGGTGTCAGTTTAAAGTTACTTA
GATAAATCAGAGTGTAATTCACATTTTAGCAGGTTAAACTTGTAAATTCCATCTTCCTCA
GTTTTGGCCAGCTGCCTTTCAAAGAGAAGGATTAATTTACACCAGCCAGGACGCCTTGTA
TGACCATATTAGATGAAATTAGACTCCACCCCTTGTTTTCTGTTGATCTGCCAGGACCTT
TGTATTTCAAGTGCTTTTTACAGTAGTAGCAAATGTTACATAAGACCAAACATGGAGCAT
ATTTGGAGTTGGTGGGCAGACCCAAATCATGATGCAAGCCTGCAGTAGCAAGTGTGCAAT
GAAGCACAACCAAATTATGTGAATGGAAGGTAACAAGAAGCCTCTCCAGAACAGCCCTTC
CTCCGCACAAGGGCTGAGAGCTTCACTGGGTAAGTTTTCCGAGGCAGTTTTCCGAGGCTG
GGCTTGGCTCAGGGCCCAGTTCTGGAGGAGCTTGCAGAAGGTGGGTTAGGTCTTTGCGAA
CGTGACCCAGACCCACAGTGGTGGGAAGAGTTTGCGCAGGCCTCTTGCCTTCTGGCGCCC
GTCCTGCCCCGCCAGCAGGCCAGGCCAGCTTGCTGCTGAAGTGGTGAGGAGAGTGTGCTC
TGCAGAGCTAGGATCAGAGGGGTAATCGCAGCAAGAGGGATTAGCTGCTGCCAGCCGTCC
ACAGGAGCCATTCTGAAATGTCATTTGAGTGATCTGGCCAAAGGTCAAATGCAGGCAGGA
GTGGAGTTTGCTATTAACTCCAACAGAATGCTGAGGTTTGCACCCAACAGTTCCCCGTAT
CTCAAAACAGGGAGAGCATTGGTTACGTAGCTGTCTAAAAAATGGAGGGACGTTGTAGCA
CGCTTGAACTGCTCGTTTTTTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATGAATTGTGTAAATTTTCTAACATACCTGGTAGTAGGTGTCAGTTTAAAGTTACTTA
GATAAATCAGAGTGTAATTCACATTTTAGCAGGTTAAACTTGTAAATTCCATCTTCCTCA
GTTTTGGCCAGCTGCCTTTCAAAGAGAAGGATTAATTTACACCAGCCAGGACGCCTTGTA
TGACCATATTAGATGAAATTAGACTCCACCCCTTGTTTTCTGTTGATCTGCCAGGACCTT
TGTATTTCAAGTGCTTTTTACAGTAGTAGCAAATGTTACATAAGACCAAACATGGAGCAT
ATTTGGAGTTGGTGGGCAGACCCAAATCATGATGCAAGCCTGCAGTAGCAAGTGTGCAAT
GAAGCACAACCAAATTATGTGAATGGAAGGTAACAAGAAGCCTCTCCAGAACAGCCCTTC
CTCCGCACAAGGGCTGAGAGCTTCACTGGGTAAGTTTTCCGAGGCAGTTTTCCGAGGCTG
GGCTTGGCTCAGGGCCCAGTTCTGGAGGAGCTTGCAGAAGGTGGGTTAGGTCTTTGCGAA
CGTGACCCAGACCCACAGTGGTGGGAAGAGTTTGCGCAGGCCTCTTGCCTTCTGGCGCCC
GTCCTGCCCCGCCAGCAGGCCAGGCCAGCTTGCTGCTGAAGTGGTGAGGAGAGTGTGCTC
TGCAGAGCTAGGATCAGAGGGGTAATCGCAGCAAGAGGGATTAGCTGCTGCCAGCCGTCC
ACAGGAGCCATTCTGAAATGTCATTTGAGTGATCTGGCCAAAGGTCAAATGCAGGCAGGA
GTGGAGTTTGCTATTAACTCCAACAGAATGCTGAGGTTTGCACCCAACAGTTCCCCGTAT
CTCAAAACAGGGAGAGCATTGGTTACGTAGCTGTCTAAAAAATGGAGGGACGTTGTAGCA
CGCTTGAACTGCTCGTTTTTTATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               218-377, - strand, RNAz p=0.975031
               

               
               456-569, + strand, RNAz p=0.744796

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-377, - strand, RNAz p=0.975031
               

               
               456-569, + strand, RNAz p=0.744796

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-924, gnl|bosTau2|chr22 (28599947-28600884)
               

               
               1-924, gnl|Hg17|chr3 (63928233-63929169)
               

               
               1-924, gnl|Mm7|chr14 (11886149-11887291)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr22 (28599947-28600884)
               

               
               1-924, gnl|Hg17|chr3 (63928233-63929169)
               

               
               1-924, gnl|Mm7|chr14 (11886149-11887291)

	218-377, - strand, RNAz p=0.975031
	456-569, + strand, RNAz p=0.744796

	1-924, gnl\|bosTau2\|chr22 (28599947-28600884)
	1-924, gnl\|Hg17\|chr3 (63928233-63929169)
	1-924, gnl\|Mm7\|chr14 (11886149-11887291)