Non-Coding RNA Search

Ss1.1-Thy1-THY010018F04.5

Sequence:


               
               AACTCAGCTCACATCATCTCTGCTTTTTGTTTTTTAAATTATTGTTTGTTGCTGTTTCTG
ACTTGGCCTTGTGTTTCAAAACTGGGCAGGACTTGCTAAGGTTTGCTGTAAATTACAAGG
ATACACCAGACCATCAGGGTGGGGGCTGGGGGGTCATGACCTTCAACAAATGGTGGTCTT
TTTTTTATCAGACAAAGTCTGCTCCCCTAGCTACAGGAGTTCCTGGGGAGGGGGTGGAGA
ATGCAAATATGCGTATTGGAGTTTTTGAAGAGTAGAATTAAATAATTGTCCCTCTCACAC
AACAGAGGAAGGCAAGCCACAGACTTCTGGTGGCCTGCATTTGGAAGTGGCCATGATGCT
GTGAATTTAGCATTCCCTTTGGCCACCAAAGCCCTGAGGGGCTGCACTGAAGGGGCTTCA
CAGGAGCTACATAAAGTGTGTCATGGAACAGGCTGGTCACTGATTGGTGTTAGGGCTCTG
GCCCCATGTGTATTCAACTCTATAAAATAGGGAAGTGGAAAAAAAAAAAAAAAAAAAACC
ATTCTGAATTTGTCGTCAGTCACTTTATGAGAATTCAGCTGCTTGCATGTTTAACGGGAT
AAAGTCCAGTCTGGCAGGCTTTGTTAGAGACTAAACTTAAAATGGGTTTCCTTAGGTGAA
AACCTATTTTAATTAAGCTCCCCCAGAACACCTGGCCAGGTCGTATCCTAAGCTTCAGAG
GCTTCCTTGTGGCAAAGCAAACAGCCTAGTACTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCAGCTCACATCATCTCTGCTTTTTGTTTTTTAAATTATTGTTTGTTGCTGTTTCTG
ACTTGGCCTTGTGTTTCAAAACTGGGCAGGACTTGCTAAGGTTTGCTGTAAATTACAAGG
ATACACCAGACCATCAGGGTGGGGGCTGGGGGGTCATGACCTTCAACAAATGGTGGTCTT
TTTTTTATCAGACAAAGTCTGCTCCCCTAGCTACAGGAGTTCCTGGGGAGGGGGTGGAGA
ATGCAAATATGCGTATTGGAGTTTTTGAAGAGTAGAATTAAATAATTGTCCCTCTCACAC
AACAGAGGAAGGCAAGCCACAGACTTCTGGTGGCCTGCATTTGGAAGTGGCCATGATGCT
GTGAATTTAGCATTCCCTTTGGCCACCAAAGCCCTGAGGGGCTGCACTGAAGGGGCTTCA
CAGGAGCTACATAAAGTGTGTCATGGAACAGGCTGGTCACTGATTGGTGTTAGGGCTCTG
GCCCCATGTGTATTCAACTCTATAAAATAGGGAAGTGGAAAAAAAAAAAAAAAAAAAACC
ATTCTGAATTTGTCGTCAGTCACTTTATGAGAATTCAGCTGCTTGCATGTTTAACGGGAT
AAAGTCCAGTCTGGCAGGCTTTGTTAGAGACTAAACTTAAAATGGGTTTCCTTAGGTGAA
AACCTATTTTAATTAAGCTCCCCCAGAACACCTGGCCAGGTCGTATCCTAAGCTTCAGAG
GCTTCCTTGTGGCAAAGCAAACAGCCTAGTACTGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               307-422, + strand, RNAz p=0.992666

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               307-422, + strand, RNAz p=0.992666

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-754, gnl|bosTau2|chr22 (24547610-24548357)
               

               
               1-754, gnl|Hg17|chr3 (71339616-71338861)
               

               
               1-754, gnl|Mm7|chr6 (99260908-99260182)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-754, gnl|bosTau2|chr22 (24547610-24548357)
               

               
               1-754, gnl|Hg17|chr3 (71339616-71338861)
               

               
               1-754, gnl|Mm7|chr6 (99260908-99260182)

	1-754, gnl\|bosTau2\|chr22 (24547610-24548357)
	1-754, gnl\|Hg17\|chr3 (71339616-71338861)
	1-754, gnl\|Mm7\|chr6 (99260908-99260182)