Non-Coding RNA Search

Ss1.1-Thy1-THY010022C01.5

Sequence:


               
               CAAATTGATTCTATCAAACTGTGAATGAGAAGATTTTTTTTTCTTCTTTTAAAAAAAATT
TTTTTTTAATATTTTGAGAGGATTTTTTTAAAACAACTTTTTCTTGAAAACTAGTATGAT
ATGTATGGTATTTATTTTTGGCCCAGGCACGCATGCGCGCGCGTGCACCCGCACGTGCGT
GCACCCGCGCACACATACAAATGTGTAACTTTGATTAGAATGAGGACATTGTCCTTTTAA
CTTTCTTGTTTTGCCACTGTACTTTCTTTTGTCATTTTTTTTTCCTAGCCTGACTCATAC
TTTCCTTTCATATTTAAGTTATTTTGTTTATTGCACGATTATGAGAATAAAATCCTGGTA
CAAAAATATCTAGTATTAATTCCTTGCTGGCAGAGTTTCCATACCTAGAGAATCCCAGCT
GTGACTTATTTTTGGCTTGCCTTAACTGGATTGAAAGTTAGAAGGCCTTACAAAGCCTTT
AACTCAGTGTTTGTTTTTAGTTTCTTTAACCATTTTTTTGTGCACCATTTGTCTGTTTTT
TAAGAGTGGTTGTAAAGTACCTCTCAGGTTTAAATTGTGTTGGTTTTTCCTAGTTCTTTA
TTTTGACAGCTTAAAAATGTGTTCATTATTAGCTGGTAAATTTAATATGATGCCTAATGG
AAGGGTCATCATTTAAAAAAATAAAATAAAATAAAATGAATGAATGAATGAATGAATGAA
TGAATCAGGTCAGTCCTGTCTCTGGCAGCAGCCTTTATTTTGGCAAATGGCTGTACCTAC
CAGTAGTTCTCAGTACTGGGCAAAAGCAGGTCTCTGTCTAGAAGTTCAGCAAGATGCTCG
TTGAACTGAATTGAAAGCCCACACAAGACAGCATTGACATGGACGCAGATGACTTACAGA
TTCACCAGTAAGCATTTTGAAAATTGAGCAAATTGTTACTTCTTAAAGCACCGAGGAAAG
GGTTTTATATGGTGAAGAAAGTCCAGCCAAAGGAGAAAAGTGCGCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAATTGATTCTATCAAACTGTGAATGAGAAGATTTTTTTTTCTTCTTTTAAAAAAAATT
TTTTTTTAATATTTTGAGAGGATTTTTTTAAAACAACTTTTTCTTGAAAACTAGTATGAT
ATGTATGGTATTTATTTTTGGCCCAGGCACGCATGCGCGCGCGTGCACCCGCACGTGCGT
GCACCCGCGCACACATACAAATGTGTAACTTTGATTAGAATGAGGACATTGTCCTTTTAA
CTTTCTTGTTTTGCCACTGTACTTTCTTTTGTCATTTTTTTTTCCTAGCCTGACTCATAC
TTTCCTTTCATATTTAAGTTATTTTGTTTATTGCACGATTATGAGAATAAAATCCTGGTA
CAAAAATATCTAGTATTAATTCCTTGCTGGCAGAGTTTCCATACCTAGAGAATCCCAGCT
GTGACTTATTTTTGGCTTGCCTTAACTGGATTGAAAGTTAGAAGGCCTTACAAAGCCTTT
AACTCAGTGTTTGTTTTTAGTTTCTTTAACCATTTTTTTGTGCACCATTTGTCTGTTTTT
TAAGAGTGGTTGTAAAGTACCTCTCAGGTTTAAATTGTGTTGGTTTTTCCTAGTTCTTTA
TTTTGACAGCTTAAAAATGTGTTCATTATTAGCTGGTAAATTTAATATGATGCCTAATGG
AAGGGTCATCATTTAAAAAAATAAAATAAAATAAAATGAATGAATGAATGAATGAATGAA
TGAATCAGGTCAGTCCTGTCTCTGGCAGCAGCCTTTATTTTGGCAAATGGCTGTACCTAC
CAGTAGTTCTCAGTACTGGGCAAAAGCAGGTCTCTGTCTAGAAGTTCAGCAAGATGCTCG
TTGAACTGAATTGAAAGCCCACACAAGACAGCATTGACATGGACGCAGATGACTTACAGA
TTCACCAGTAAGCATTTTGAAAATTGAGCAAATTGTTACTTCTTAAAGCACCGAGGAAAG
GGTTTTATATGGTGAAGAAAGTCCAGCCAAAGGAGAAAAGTGCGCGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               675-793, - strand, RNAz p=0.560297

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               675-793, - strand, RNAz p=0.560297

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               99-793, gnl|bosTau2|chr1 (101212361-101211684)
               

               
               99-793, gnl|Hg17|chr3 (18409921-18409232)
               

               
               99-793, gnl|Mm7|chr17 (49931627-49931001)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-793, gnl|bosTau2|chr1 (101212361-101211684)
               

               
               99-793, gnl|Hg17|chr3 (18409921-18409232)
               

               
               99-793, gnl|Mm7|chr17 (49931627-49931001)

	99-793, gnl\|bosTau2\|chr1 (101212361-101211684)
	99-793, gnl\|Hg17\|chr3 (18409921-18409232)
	99-793, gnl\|Mm7\|chr17 (49931627-49931001)