Non-Coding RNA Search

Ss1.1-Thy1-THY010022D01.5

Sequence:


               
               AACAGCTACCTGCACCTCCTGGGCACCAGGCAGCCAGCTGGGTGCTTTGCAAGGTTGGCC
AGAGCCCCTGGGTTATTTCCACTCAGCAGATCAGCAAGCTGAAGCGTCATGATGTTAAGG
ATCCCGCCAGAGTCATCTGGGAGGCAGCTGAAACCCAGCCCTGCTGTCCTCTGCTCTTTC
CAGCCGGAAGAACATTAACTGCTTTGACAGCGTCTTGCTTCTTTGCAATCACCTCACGAA
TCCGCACATAGGAGCTGAACTCACTTTTGATCCCCAGTGATATTTTTACCAGAGTTTCTC
TGAGGTTTGGCCTGTTCCAAGAGTCAAGGGATGACTAACTGTGGGGCCGGGAGACGTTTC
AAATGACCCCAGTGTCGTCCTGATGAGTTTTCCAGAGCCTAAAGTGCTCCAAGGGGCCGG
CGGGAATTCCCATTCTCCCTCCTAAGGAAGGACTTTGAAGCCAAGACCCACCAAGAGACG
CCTCAGCCTCGACCACTGGTGCAAACAAACAGCACGAGATTTTGGCCCTCTTTTGGAACA
GAGAGTAAGGCACATAACTGGAGAAACTGATAACCTTCCAGAAGTCTCTCTGGCCCAGAG
AGCAGAGCACCAGAGAAGATTCCTAAACTTTGCTTCTCCAGGAACAGGGAGGAGAATCTT
GGAGGTTGGGCTTAGCTTCCCTCAGGAATCTTAAGGACATCATCAGCCACCACAGGGCTG
GGCAGAATCCAGTCAGAAGGTGTGGGAGCGAGGACTAAATTTCACACCAGTATCTTTAAA
TTGTCTTATTAGACATACACATACATGGGAAGGGCTGGCTGGCTTGACCCACAGTTTCGC
TCATACAGCAAAGTATCTCATGGCTGAAAATGGGTCTGGACAAGCCCTTCCTGCATCCCG
CAGACGCTGGGCCATCCTGCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGCTACCTGCACCTCCTGGGCACCAGGCAGCCAGCTGGGTGCTTTGCAAGGTTGGCC
AGAGCCCCTGGGTTATTTCCACTCAGCAGATCAGCAAGCTGAAGCGTCATGATGTTAAGG
ATCCCGCCAGAGTCATCTGGGAGGCAGCTGAAACCCAGCCCTGCTGTCCTCTGCTCTTTC
CAGCCGGAAGAACATTAACTGCTTTGACAGCGTCTTGCTTCTTTGCAATCACCTCACGAA
TCCGCACATAGGAGCTGAACTCACTTTTGATCCCCAGTGATATTTTTACCAGAGTTTCTC
TGAGGTTTGGCCTGTTCCAAGAGTCAAGGGATGACTAACTGTGGGGCCGGGAGACGTTTC
AAATGACCCCAGTGTCGTCCTGATGAGTTTTCCAGAGCCTAAAGTGCTCCAAGGGGCCGG
CGGGAATTCCCATTCTCCCTCCTAAGGAAGGACTTTGAAGCCAAGACCCACCAAGAGACG
CCTCAGCCTCGACCACTGGTGCAAACAAACAGCACGAGATTTTGGCCCTCTTTTGGAACA
GAGAGTAAGGCACATAACTGGAGAAACTGATAACCTTCCAGAAGTCTCTCTGGCCCAGAG
AGCAGAGCACCAGAGAAGATTCCTAAACTTTGCTTCTCCAGGAACAGGGAGGAGAATCTT
GGAGGTTGGGCTTAGCTTCCCTCAGGAATCTTAAGGACATCATCAGCCACCACAGGGCTG
GGCAGAATCCAGTCAGAAGGTGTGGGAGCGAGGACTAAATTTCACACCAGTATCTTTAAA
TTGTCTTATTAGACATACACATACATGGGAAGGGCTGGCTGGCTTGACCCACAGTTTCGC
TCATACAGCAAAGTATCTCATGGCTGAAAATGGGTCTGGACAAGCCCTTCCTGCATCCCG
CAGACGCTGGGCCATCCTGCTCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               555-668, - strand, RNAz p=0.998596

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               555-668, - strand, RNAz p=0.998596

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               581-715, - strand, RNAmicro p=0.999961

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               581-715, - strand, RNAmicro p=0.999961

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               53-876, gnl|bosTau2|chr20 (27225044-27225863)
               

               
               53-876, gnl|Hg17|chr5 (31726168-31724894)
               

               
               53-876, gnl|Mm7|chr15 (12751811-12752616)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-876, gnl|bosTau2|chr20 (27225044-27225863)
               

               
               53-876, gnl|Hg17|chr5 (31726168-31724894)
               

               
               53-876, gnl|Mm7|chr15 (12751811-12752616)

	53-876, gnl\|bosTau2\|chr20 (27225044-27225863)
	53-876, gnl\|Hg17\|chr5 (31726168-31724894)
	53-876, gnl\|Mm7\|chr15 (12751811-12752616)