Ss1.1-Thy1-THY010022D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGATGTCCAGCTCATCAGGATTCTGGGCTGTGTAGTCATAGAGCGCCCTGTAGTCCTGG GCTGGCAGGGTGGGGGGTCCTGGTACCTCCTGCACGTTGATGGCAGCGTAGACACCCTCA TTCCGATCGGGGATGGGAGTCAGGGTCCCCGCAGAAGCTGCTGGCGAAGCATTCTTGGGA CTTCCGTGCAGTAGCCCGGAGAACCTCTTTATCATACCACAGGATGGCTGTACACCGGGG CTGCCACATGACGGGGAGATCTCCCGATCGTAGTAGTTCTGGTAGGGCACCGGAGCTGGG GGCTCGGTGCCCGTGCTCTTGGCCTGGATGAAGCCGTCAATGTCAGCGTCCACGCTGCAG CCTTCCAGTGTCACCCGCACCTCTTCGTAGAGCTCGTCATCCTTGACGCACTGCATGGAG AGCTGGTTGCAGTGCACCCACAGGGCATTGCGGAGGATGGTCAGCCGGTCAAACTCTTGC AGCTGGAAGGCCTCGCAGGTGGTCCGATGCTCCTGTTCCCACTCGCCCCGCACCTTCTCC AGCTGCTCGATGTTCTGCCTGTACACCCGCTCTGCCTCCATGGCGGAGTCCTTGCACTGC TTGGCCTTGTTCTGGCTCTTCTCCACCTGCTTCTGTTGCCCATTGGCACTAATGCGCTCA AAGATCTGCTCCGCGTCGTCAGCATCCCGGCACTTCTGCTCATACGTCTTCTTGGACTCC ATGGCCTTCTTGTAGAGGGACAGCTTACTCTTCTGGACACGGTCCATGACAGCTTCGAAC TTCTTCCTCTGCTCCTTCTGCCTCTCTCGGAACTCCTCCAGGCTCCGCAGCTCCTCGCGC AGGGCCAGGGCCAGCTGGATGTGGGAGCTGCCCACGTTCTCCATTTGCTGCTTCAGGGAG TCAAAGGAGGCCCTCAGGGAGTTGATCTCCGTCTGGCCACCTGCCTTCCGGGCGATCTGC ACCAGCTCCTTGCCGTACCGCTCCTCCGCCTGGGCCCTCTGCCTCAGCAGCTCCTCCACG TCCTTGCACATCTTCCTGCCATCCAGCAGCCGCTGCAGCAGCACCTCGTAGCCTGTGTGG GCCGTGAAGTCCCTGCACCAAAAGGCATCCTTGAACTGAAGCTGGGGCATCATCCTCAGG CAACTGCCACGGCAGAGCTCGCTCTCCTGCCACAGACAGGGCTGAACGAGGGCTAGGAGC CAGGAGCACTGTCCCAGGGCCGACAGGGCTGGCTCGGGGCCCCCCTCCTCGGCCGGCGCC GTCTGCAGCGCCTCAAAAGGCAGCCGTGAGCCAGAGACAGCTGCCGGAGGGGGGAAAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGATGTCCAGCTCATCAGGATTCTGGGCTGTGTAGTCATAGAGCGCCCTGTAGTCCTGG GCTGGCAGGGTGGGGGGTCCTGGTACCTCCTGCACGTTGATGGCAGCGTAGACACCCTCA TTCCGATCGGGGATGGGAGTCAGGGTCCCCGCAGAAGCTGCTGGCGAAGCATTCTTGGGA CTTCCGTGCAGTAGCCCGGAGAACCTCTTTATCATACCACAGGATGGCTGTACACCGGGG CTGCCACATGACGGGGAGATCTCCCGATCGTAGTAGTTCTGGTAGGGCACCGGAGCTGGG GGCTCGGTGCCCGTGCTCTTGGCCTGGATGAAGCCGTCAATGTCAGCGTCCACGCTGCAG CCTTCCAGTGTCACCCGCACCTCTTCGTAGAGCTCGTCATCCTTGACGCACTGCATGGAG AGCTGGTTGCAGTGCACCCACAGGGCATTGCGGAGGATGGTCAGCCGGTCAAACTCTTGC AGCTGGAAGGCCTCGCAGGTGGTCCGATGCTCCTGTTCCCACTCGCCCCGCACCTTCTCC AGCTGCTCGATGTTCTGCCTGTACACCCGCTCTGCCTCCATGGCGGAGTCCTTGCACTGC TTGGCCTTGTTCTGGCTCTTCTCCACCTGCTTCTGTTGCCCATTGGCACTAATGCGCTCA AAGATCTGCTCCGCGTCGTCAGCATCCCGGCACTTCTGCTCATACGTCTTCTTGGACTCC ATGGCCTTCTTGTAGAGGGACAGCTTACTCTTCTGGACACGGTCCATGACAGCTTCGAAC TTCTTCCTCTGCTCCTTCTGCCTCTCTCGGAACTCCTCCAGGCTCCGCAGCTCCTCGCGC AGGGCCAGGGCCAGCTGGATGTGGGAGCTGCCCACGTTCTCCATTTGCTGCTTCAGGGAG TCAAAGGAGGCCCTCAGGGAGTTGATCTCCGTCTGGCCACCTGCCTTCCGGGCGATCTGC ACCAGCTCCTTGCCGTACCGCTCCTCCGCCTGGGCCCTCTGCCTCAGCAGCTCCTCCACG TCCTTGCACATCTTCCTGCCATCCAGCAGCCGCTGCAGCAGCACCTCGTAGCCTGTGTGG GCCGTGAAGTCCCTGCACCAAAAGGCATCCTTGAACTGAAGCTGGGGCATCATCCTCAGG CAACTGCCACGGCAGAGCTCGCTCTCCTGCCACAGACAGGGCTGAACGAGGGCTAGGAGC CAGGAGCACTGTCCCAGGGCCGACAGGGCTGGCTCGGGGCCCCCCTCCTCGGCCGGCGCC GTCTGCAGCGCCTCAAAAGGCAGCCGTGAGCCAGAGACAGCTGCCGGAGGGGGGAAAAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1211-1320, - strand, RNAz p=0.733764 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1211-1320, - strand, RNAz p=0.733764 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_003978, - |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 24-160, gnl|bosTau2|chr21 (21510613-21510477) | |
| 24-160, gnl|hg17|chr15 (75114789-75115363) | |
| 24-160, gnl|Hg17|chr15 (75115331-75115195) | |
| 24-160, gnl|loxAfr1|scaffold_3691 (25346-25883) | |
| 24-160, gnl|mm7|chr9 (56155047-56155534) | |
| 24-160, gnl|Mm7|chr9 (56155526-56155390) | |
| 24-160, gnl|panTro1|chr16_random (23722894-23722320) | |
| 24-160, gnl|rheMac2|chr7 (56045783-56046358) | |
| 24-160, gnl|rn3|chr8 (59749968-59750467) | |
| 393-493, gnl|bosTau2|chr21 (21506314-21506214) | |
| 393-493, gnl|canFam2|chr30 (42269766-42269651) | |
| 393-493, gnl|dasNov1|scaffold_104900 (3628-3511) | |
| 393-493, gnl|echTel1|scaffold_311851 (145368-145262) | |
| 393-493, gnl|fr1|chrUn (225456265-225456374) | |
| 393-493, gnl|hg17|chr15 (75110574-75110690) | |
| 393-493, gnl|Hg17|chr15 (75110674-75110574) | |
| 393-493, gnl|loxAfr1|scaffold_3691 (20702-20818) | |
| 393-493, gnl|mm7|chr9 (56152789-56152894) | |
| 393-493, gnl|Mm7|chr9 (56152888-56152788) | |
| 393-493, gnl|oryCun1|scaffold_158097 (6345-6451) | |
| 393-493, gnl|panTro1|chr16_random (23727117-23727001) | |
| 393-493, gnl|rheMac2|chr7 (56041467-56041583) | |
| 393-493, gnl|rn3|chr8 (59747846-59747954) | |
| 393-493, gnl|tetNig1|chr13 (6766235-6766126) | |
| 618-718, gnl|bosTau2|chr21 (21503771-21503671) | |
| 618-718, gnl|Hg17|chr15 (75108048-75107948) | |
| 618-718, gnl|Mm7|chr9 (56151026-56150926) | |
| 780-886, gnl|bosTau2|chr21 (21501121-21501015) | |
| 780-886, gnl|canFam2|chr30 (42280174-42280055) | |
| 780-886, gnl|echTel1|scaffold_241076 (2137-2257) | |
| 780-886, gnl|fr1|chrUn (225454838-225454959) | |
| 780-886, gnl|hg17|chr15 (75104883-75105004) | |
| 780-886, gnl|Hg17|chr15 (75105000-75104894) | |
| 780-886, gnl|mm7|chr9 (56148202-56148323) | |
| 780-886, gnl|Mm7|chr9 (56148319-56148213) | |
| 780-886, gnl|oryCun1|scaffold_126372 (6250-6138) | |
| 780-886, gnl|panTro1|chr16_random (23732977-23732856) | |
| 780-886, gnl|rheMac2|chr7 (56035642-56035764) | |
| 780-886, gnl|rn3|chr8 (59743917-59744038) | |
| 780-886, gnl|tetNig1|chr13 (6767442-6767324) | |
| 1098-1320, gnl|bosTau2|chr21 (21468000-21467777) | |
| 1098-1320, gnl|Hg17|chr15 (75075005-75074785) | |
| 1098-1320, gnl|Mm7|chr9 (56118110-56117882) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-160, gnl|bosTau2|chr21 (21510613-21510477) | |
| 24-160, gnl|hg17|chr15 (75114789-75115363) | |
| 24-160, gnl|Hg17|chr15 (75115331-75115195) | |
| 24-160, gnl|loxAfr1|scaffold_3691 (25346-25883) | |
| 24-160, gnl|mm7|chr9 (56155047-56155534) | |
| 24-160, gnl|Mm7|chr9 (56155526-56155390) | |
| 24-160, gnl|panTro1|chr16_random (23722894-23722320) | |
| 24-160, gnl|rheMac2|chr7 (56045783-56046358) | |
| 24-160, gnl|rn3|chr8 (59749968-59750467) | |
| 393-493, gnl|bosTau2|chr21 (21506314-21506214) | |
| 393-493, gnl|canFam2|chr30 (42269766-42269651) | |
| 393-493, gnl|dasNov1|scaffold_104900 (3628-3511) | |
| 393-493, gnl|echTel1|scaffold_311851 (145368-145262) | |
| 393-493, gnl|fr1|chrUn (225456265-225456374) | |
| 393-493, gnl|hg17|chr15 (75110574-75110690) | |
| 393-493, gnl|Hg17|chr15 (75110674-75110574) | |
| 393-493, gnl|loxAfr1|scaffold_3691 (20702-20818) | |
| 393-493, gnl|mm7|chr9 (56152789-56152894) | |
| 393-493, gnl|Mm7|chr9 (56152888-56152788) | |
| 393-493, gnl|oryCun1|scaffold_158097 (6345-6451) | |
| 393-493, gnl|panTro1|chr16_random (23727117-23727001) | |
| 393-493, gnl|rheMac2|chr7 (56041467-56041583) | |
| 393-493, gnl|rn3|chr8 (59747846-59747954) | |
| 393-493, gnl|tetNig1|chr13 (6766235-6766126) | |
| 618-718, gnl|bosTau2|chr21 (21503771-21503671) | |
| 618-718, gnl|Hg17|chr15 (75108048-75107948) | |
| 618-718, gnl|Mm7|chr9 (56151026-56150926) | |
| 780-886, gnl|bosTau2|chr21 (21501121-21501015) | |
| 780-886, gnl|canFam2|chr30 (42280174-42280055) | |
| 780-886, gnl|echTel1|scaffold_241076 (2137-2257) | |
| 780-886, gnl|fr1|chrUn (225454838-225454959) | |
| 780-886, gnl|hg17|chr15 (75104883-75105004) | |
| 780-886, gnl|Hg17|chr15 (75105000-75104894) | |
| 780-886, gnl|mm7|chr9 (56148202-56148323) | |
| 780-886, gnl|Mm7|chr9 (56148319-56148213) | |
| 780-886, gnl|oryCun1|scaffold_126372 (6250-6138) | |
| 780-886, gnl|panTro1|chr16_random (23732977-23732856) | |
| 780-886, gnl|rheMac2|chr7 (56035642-56035764) | |
| 780-886, gnl|rn3|chr8 (59743917-59744038) | |
| 780-886, gnl|tetNig1|chr13 (6767442-6767324) | |
| 1098-1320, gnl|bosTau2|chr21 (21468000-21467777) | |
| 1098-1320, gnl|Hg17|chr15 (75075005-75074785) | |
| 1098-1320, gnl|Mm7|chr9 (56118110-56117882) |