Non-Coding RNA Search

Ss1.1-Thy1-THY010023B08.5

Sequence:


               
               TTCCAACAGGCAGTTCCGAAAGCAGAGGAAGCAGGCGGTGGCCGTCGCCCATGTTCCAGG
TGGCCAGTTGCCTCCCGCCTCCCCACCACCCCTCGCACCTGCTCTCCGAATGCAGAGACC
GTTTCTGTCCCGAATCAAACCGTTCATCAGGGTTTACAGGTACGCCTTCTGCCCAGACAC
CCTGACTCCGCAAGAAGGATCTGAAATGTTCTGAGAGCTCTCAAATGACGTGCACCTGAA
ATGTCCACCTGAAAACAAAAAAGATGCAGGATGACACCTGGCCGCCCTGTGGAAAAGGAT
CGGGGCCTGCCAGGGCTCTTAGGCATCACCGGCCGTCTGCTGTGTGGGGTGCTTAATAGT
TTCAAGAGCTCAGGGTCCCGGCTGCCAGGCCTGTTGCCTAGGACAGGCCCAGGCCCATGG
AACAAGCAGCTTCGGAGCAATCGCAGTACCTCCTGGCTTCCGTAGCCTCCTCTGTTTCTT
GTTATTCTAGTTGAGTACTGCGTTCAGACAGAGGTTGCCAATAAAGTTTATTGTAGGAGC
CGCGTGTCAATATCTGTTGTACCCCCCGCCTAGGGTGCTTGTAATTAAAATGCCACAGAT
AGTCTGGGAGAGGCATGAAAATTTGATGGCACATTGATTTCAGGTTCATCTTGAAATTTG
TCCTCCGCTGGACTCGATACGCCAGGCAGATGCGGGGTGGCTTTTGTCAGGGGGGCCCTG
CTGCAATGAGACAGAGCGGTCTCGATCTGAATATTAAATACAACTTGCTGCTTATGACAG
ATGACTCCTTGGGCGCTGAAACACGCCGCACTCCTCTGTGCCCATTCTTCTCCACGGAAT
GTGTAAGATAGGCTCACACAGATGCACTTTACACGTGAAAAGAACTTGTAAGAAAGTCTC
TGGGCAAAAGAAAGAAAGAGTTTTGAGAAATGCTGGCTTCAAACCCAGGATAGTCTGTCC
AGTATTCCAAACGTAGAAATGTTCCTTGGATCTGATTTAAGAAAGCTGGAAAAATAATGG
TAACGAAGATAATACCCTCATCAGGATTACGGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCAACAGGCAGTTCCGAAAGCAGAGGAAGCAGGCGGTGGCCGTCGCCCATGTTCCAGG
TGGCCAGTTGCCTCCCGCCTCCCCACCACCCCTCGCACCTGCTCTCCGAATGCAGAGACC
GTTTCTGTCCCGAATCAAACCGTTCATCAGGGTTTACAGGTACGCCTTCTGCCCAGACAC
CCTGACTCCGCAAGAAGGATCTGAAATGTTCTGAGAGCTCTCAAATGACGTGCACCTGAA
ATGTCCACCTGAAAACAAAAAAGATGCAGGATGACACCTGGCCGCCCTGTGGAAAAGGAT
CGGGGCCTGCCAGGGCTCTTAGGCATCACCGGCCGTCTGCTGTGTGGGGTGCTTAATAGT
TTCAAGAGCTCAGGGTCCCGGCTGCCAGGCCTGTTGCCTAGGACAGGCCCAGGCCCATGG
AACAAGCAGCTTCGGAGCAATCGCAGTACCTCCTGGCTTCCGTAGCCTCCTCTGTTTCTT
GTTATTCTAGTTGAGTACTGCGTTCAGACAGAGGTTGCCAATAAAGTTTATTGTAGGAGC
CGCGTGTCAATATCTGTTGTACCCCCCGCCTAGGGTGCTTGTAATTAAAATGCCACAGAT
AGTCTGGGAGAGGCATGAAAATTTGATGGCACATTGATTTCAGGTTCATCTTGAAATTTG
TCCTCCGCTGGACTCGATACGCCAGGCAGATGCGGGGTGGCTTTTGTCAGGGGGGCCCTG
CTGCAATGAGACAGAGCGGTCTCGATCTGAATATTAAATACAACTTGCTGCTTATGACAG
ATGACTCCTTGGGCGCTGAAACACGCCGCACTCCTCTGTGCCCATTCTTCTCCACGGAAT
GTGTAAGATAGGCTCACACAGATGCACTTTACACGTGAAAAGAACTTGTAAGAAAGTCTC
TGGGCAAAAGAAAGAAAGAGTTTTGAGAAATGCTGGCTTCAAACCCAGGATAGTCTGTCC
AGTATTCCAAACGTAGAAATGTTCCTTGGATCTGATTTAAGAAAGCTGGAAAAATAATGG
TAACGAAGATAATACCCTCATCAGGATTACGGGCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               308-426, - strand, RNAz p=0.596844

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-426, - strand, RNAz p=0.596844

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               91-1028, gnl|bosTau2|chr18 (3818402-3817460)
               

               
               91-1028, gnl|Hg17|chr16 (77102615-77103534)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-1028, gnl|bosTau2|chr18 (3818402-3817460)
               

               
               91-1028, gnl|Hg17|chr16 (77102615-77103534)

	91-1028, gnl\|bosTau2\|chr18 (3818402-3817460)
	91-1028, gnl\|Hg17\|chr16 (77102615-77103534)