Ss1.1-Thy1-THY010027B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGTCTCCGGGACTCCAATTCCCGGAAGCTGTGAGTTCTAAGAGAAGTTCCCGCACTTG GTGCCCCGATTCTGCGAATTCCCAACCATGAGCATCCCCGGAGTGCTGTCCTTTACCCAG CAAGCCTGGGAGCAGGTGCTGGCCAAAGTGAAACGGGCCGTAGTCTACCTGGACGCCGCC AGCGCGGAAAGCCTGCACTGGGGCTGCGGGTCCTCGCGACTGTTGGAGGCGGTGGGGAGC CCTGCGTGTTACCTCAGGGAGTTCGAGCCCGCTGCAGTTGGTGGCGGAGCCGATCAGCCC AAGGCGGTGTTTGTACTGAGCTGCCTGCTGAAAGGCCGGACCGTGGAGACCCTACGGGAT ATCATCTGTCGCAGTCACTTCCAGTATTGTGTGGTGGTCACGGCTGTGAACCATGCAGTC CACCTCACAGCTAATCACGTGCCGGCGGCCGCAGCGGCAGAGCTGGAAGGGCAGCAGCCG GTGTTCGAGCAACTGGAGGAGAAGCTGTGCGAGTGGATGGGCAACATGAACTACACCGCT GAAGTGCTGCACATCCCGTTGTTACTCGCTCCTGTTGCTCCCCATCTTGCCTTGACTCCA GCTTTTGCTTCCCTTTTCCCACTATTACCCCAAGATGTGCATATCCTCAACGGTGCCCGA CCGGATAAGAGGAGACTAGGAAGCCTGAGTGAGGTGGATGCCACTGCCCTCACCCCTGAG CTGCTGCTGCAGATCAGGTGCCTAGTGTCAGGCCTCAGTTCCCTGTGTGAGCATTTAGGG GTACGGGAGGAGTGTTTTGCTGTAGGTTCCCTCAGTCGAATTATCGCTGCAGATCTGGCC AATTTTGCTCCCGCCAAGAACAAGAGGAAGACTGCCACAGGCAGGGCATCAGTGGTCTTT GTGGACAGAACTCTGGATCTCACAGGAGCCGTCGGACACCATGGAGACAACTTGGTAGAG AAAATTATTTCGGTGCTTCCCCAGCTTCCAGGCCACACCAATGACGTGATGGTGAACATG GTAGAACTCACCGCACTCCAGGCTGAGGAGGAGAATCAGAATATGGTTGCACCTGGCTGT CTTGCACAATCCAATGACCCCGCAGCCAAAGCCCTGTGGGAAGCCTTACTGAACACCAAG CACAAAGAGGCAGTGATGGAAGTCCAGAGACATCTAGTGGAAGCAGCCAGCAGAGAAAAC CTGCCAATCAAGATGAGTATGGGGAGAGTCACTCCGGGGCAGCTCACGTCCTATATCCAG CTCTTCAAGAACAACCTCAAAGCCCTAGGGAATCACTGTGGGCTCCTCCAGCTTGGGCTG GCCACCATTCAAACTCTGAAACACCCGCAGACTGCCAAGTGGGACAACTTTCTGGCTTTT GAAAGGCTCCTTCTCCAGAGCATTGGGGAGTCGACAATGTCCGTTGTGTTAAATCAGCTG CTGCCCATGATTAAGCCTTCAAACCAGAGGACCAGCGATGACTACAGCCCCGGAGAGTTG CTGGTCCTCCTGGTATATATTTATTCTGTCAGTGGAGAGCTTTCAGTGGACAAAGACCTG GGTGAAGCTGAAGAGAAAGTGAAGAAAGCGTTGGCTCAGGTCTTTTGTGAGGAGTCTGAG TTGTCACCTTTGCTGCAAAAAATCACAGGCTGTGACTCTGCAATTAACCTGACATTGCCC AAATCCAAAAGCGCTGTGGATGAACTCTTCACTTCTCTTCGAGATATTGCTGGAGCTCGG AGTCTCATGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGTCTCCGGGACTCCAATTCCCGGAAGCTGTGAGTTCTAAGAGAAGTTCCCGCACTTG GTGCCCCGATTCTGCGAATTCCCAACCATGAGCATCCCCGGAGTGCTGTCCTTTACCCAG CAAGCCTGGGAGCAGGTGCTGGCCAAAGTGAAACGGGCCGTAGTCTACCTGGACGCCGCC AGCGCGGAAAGCCTGCACTGGGGCTGCGGGTCCTCGCGACTGTTGGAGGCGGTGGGGAGC CCTGCGTGTTACCTCAGGGAGTTCGAGCCCGCTGCAGTTGGTGGCGGAGCCGATCAGCCC AAGGCGGTGTTTGTACTGAGCTGCCTGCTGAAAGGCCGGACCGTGGAGACCCTACGGGAT ATCATCTGTCGCAGTCACTTCCAGTATTGTGTGGTGGTCACGGCTGTGAACCATGCAGTC CACCTCACAGCTAATCACGTGCCGGCGGCCGCAGCGGCAGAGCTGGAAGGGCAGCAGCCG GTGTTCGAGCAACTGGAGGAGAAGCTGTGCGAGTGGATGGGCAACATGAACTACACCGCT GAAGTGCTGCACATCCCGTTGTTACTCGCTCCTGTTGCTCCCCATCTTGCCTTGACTCCA GCTTTTGCTTCCCTTTTCCCACTATTACCCCAAGATGTGCATATCCTCAACGGTGCCCGA CCGGATAAGAGGAGACTAGGAAGCCTGAGTGAGGTGGATGCCACTGCCCTCACCCCTGAG CTGCTGCTGCAGATCAGGTGCCTAGTGTCAGGCCTCAGTTCCCTGTGTGAGCATTTAGGG GTACGGGAGGAGTGTTTTGCTGTAGGTTCCCTCAGTCGAATTATCGCTGCAGATCTGGCC AATTTTGCTCCCGCCAAGAACAAGAGGAAGACTGCCACAGGCAGGGCATCAGTGGTCTTT GTGGACAGAACTCTGGATCTCACAGGAGCCGTCGGACACCATGGAGACAACTTGGTAGAG AAAATTATTTCGGTGCTTCCCCAGCTTCCAGGCCACACCAATGACGTGATGGTGAACATG GTAGAACTCACCGCACTCCAGGCTGAGGAGGAGAATCAGAATATGGTTGCACCTGGCTGT CTTGCACAATCCAATGACCCCGCAGCCAAAGCCCTGTGGGAAGCCTTACTGAACACCAAG CACAAAGAGGCAGTGATGGAAGTCCAGAGACATCTAGTGGAAGCAGCCAGCAGAGAAAAC CTGCCAATCAAGATGAGTATGGGGAGAGTCACTCCGGGGCAGCTCACGTCCTATATCCAG CTCTTCAAGAACAACCTCAAAGCCCTAGGGAATCACTGTGGGCTCCTCCAGCTTGGGCTG GCCACCATTCAAACTCTGAAACACCCGCAGACTGCCAAGTGGGACAACTTTCTGGCTTTT GAAAGGCTCCTTCTCCAGAGCATTGGGGAGTCGACAATGTCCGTTGTGTTAAATCAGCTG CTGCCCATGATTAAGCCTTCAAACCAGAGGACCAGCGATGACTACAGCCCCGGAGAGTTG CTGGTCCTCCTGGTATATATTTATTCTGTCAGTGGAGAGCTTTCAGTGGACAAAGACCTG GGTGAAGCTGAAGAGAAAGTGAAGAAAGCGTTGGCTCAGGTCTTTTGTGAGGAGTCTGAG TTGTCACCTTTGCTGCAAAAAATCACAGGCTGTGACTCTGCAATTAACCTGACATTGCCC AAATCCAAAAGCGCTGTGGATGAACTCTTCACTTCTCTTCGAGATATTGCTGGAGCTCGG AGTCTCATGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 670-789, + strand, RNAz p=0.507266 | |
| 1222-1341, + strand, RNAz p=0.644452 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 670-789, + strand, RNAz p=0.507266 | |
| 1222-1341, + strand, RNAz p=0.644452 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-926, gnl|bosTau2|chr6 (37508105-37507180) | |
| 1-926, gnl|Hg17|chr4 (54073124-54072198) | |
| 1-926, gnl|Mm7|chr5 (73950404-73949476) | |
| 1222-1398, gnl|bosTau2|chr6 (37438973-37438797) | |
| 1222-1398, gnl|canFam2|chr13 (48848756-48848961) | |
| 1222-1398, gnl|dasNov1|scaffold_213733 (2033-1829) | |
| 1222-1398, gnl|fr1|chrUn (193088817-193089013) | |
| 1222-1398, gnl|galGal2|chr4 (66285952-66285750) | |
| 1222-1398, gnl|hg17|chr4 (53980916-53981119) | |
| 1222-1398, gnl|Hg17|chr4 (53981097-53980921) | |
| 1222-1398, gnl|loxAfr1|scaffold_123827 (1219-1014) | |
| 1222-1398, gnl|mm7|chr5 (73881250-73881455) | |
| 1222-1398, gnl|Mm7|chr5 (73881431-73881255) | |
| 1222-1398, gnl|monDom2|scaffold_26 (16862597-16862810) | |
| 1222-1398, gnl|oryCun1|scaffold_186089 (7486-7690) | |
| 1222-1398, gnl|panTro1|chr3 (92700577-92700374) | |
| 1222-1398, gnl|rheMac2|chr5 (76128899-76128694) | |
| 1222-1398, gnl|rn3|chr14 (36111310-36111105) | |
| 1222-1398, gnl|tetNig1|chr1_random (1957344-1957532) | |
| 1222-1398, gnl|xenTro1|scaffold_248 (450450-450655) | |
| 1646-1752, gnl|bosTau2|chr6 (37157562-37157456) | |
| 1646-1752, gnl|canFam2|chr13 (48557958-48558185) | |
| 1646-1752, gnl|dasNov1|scaffold_40926 (4180-4407) | |
| 1646-1752, gnl|echTel1|scaffold_184922 (4962-4750) | |
| 1646-1752, gnl|galGal2|chr4 (66407868-66407661) | |
| 1646-1752, gnl|hg17|chr4 (53627761-53627986) | |
| 1646-1752, gnl|Hg17|chr4 (53627968-53627862) | |
| 1646-1752, gnl|loxAfr1|scaffold_3070 (93040-93267) | |
| 1646-1752, gnl|mm7|chr5 (73655078-73655300) | |
| 1646-1752, gnl|Mm7|chr5 (73655282-73655176) | |
| 1646-1752, gnl|monDom2|scaffold_26 (16531941-16532201) | |
| 1646-1752, gnl|panTro1|chr3 (93077751-93077526) | |
| 1646-1752, gnl|rheMac2|chr5 (76474335-76474110) | |
| 1646-1752, gnl|rn3|chr14 (36341990-36341770) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-926, gnl|bosTau2|chr6 (37508105-37507180) | |
| 1-926, gnl|Hg17|chr4 (54073124-54072198) | |
| 1-926, gnl|Mm7|chr5 (73950404-73949476) | |
| 1222-1398, gnl|bosTau2|chr6 (37438973-37438797) | |
| 1222-1398, gnl|canFam2|chr13 (48848756-48848961) | |
| 1222-1398, gnl|dasNov1|scaffold_213733 (2033-1829) | |
| 1222-1398, gnl|fr1|chrUn (193088817-193089013) | |
| 1222-1398, gnl|galGal2|chr4 (66285952-66285750) | |
| 1222-1398, gnl|hg17|chr4 (53980916-53981119) | |
| 1222-1398, gnl|Hg17|chr4 (53981097-53980921) | |
| 1222-1398, gnl|loxAfr1|scaffold_123827 (1219-1014) | |
| 1222-1398, gnl|mm7|chr5 (73881250-73881455) | |
| 1222-1398, gnl|Mm7|chr5 (73881431-73881255) | |
| 1222-1398, gnl|monDom2|scaffold_26 (16862597-16862810) | |
| 1222-1398, gnl|oryCun1|scaffold_186089 (7486-7690) | |
| 1222-1398, gnl|panTro1|chr3 (92700577-92700374) | |
| 1222-1398, gnl|rheMac2|chr5 (76128899-76128694) | |
| 1222-1398, gnl|rn3|chr14 (36111310-36111105) | |
| 1222-1398, gnl|tetNig1|chr1_random (1957344-1957532) | |
| 1222-1398, gnl|xenTro1|scaffold_248 (450450-450655) | |
| 1646-1752, gnl|bosTau2|chr6 (37157562-37157456) | |
| 1646-1752, gnl|canFam2|chr13 (48557958-48558185) | |
| 1646-1752, gnl|dasNov1|scaffold_40926 (4180-4407) | |
| 1646-1752, gnl|echTel1|scaffold_184922 (4962-4750) | |
| 1646-1752, gnl|galGal2|chr4 (66407868-66407661) | |
| 1646-1752, gnl|hg17|chr4 (53627761-53627986) | |
| 1646-1752, gnl|Hg17|chr4 (53627968-53627862) | |
| 1646-1752, gnl|loxAfr1|scaffold_3070 (93040-93267) | |
| 1646-1752, gnl|mm7|chr5 (73655078-73655300) | |
| 1646-1752, gnl|Mm7|chr5 (73655282-73655176) | |
| 1646-1752, gnl|monDom2|scaffold_26 (16531941-16532201) | |
| 1646-1752, gnl|panTro1|chr3 (93077751-93077526) | |
| 1646-1752, gnl|rheMac2|chr5 (76474335-76474110) | |
| 1646-1752, gnl|rn3|chr14 (36341990-36341770) |