Non-Coding RNA Search

Ss1.1-Thy1-THY010027C10.5

Sequence:


               
               CCTCTGCGGGCGCTGCAGCTGGAGCGGTAGTCCCGCGGCGCAAACCGGAGTCGGCCTGGA
CTGAAGCGGGTGCAGGGAGAGTGTGGTGGGCGCAGCTTTGAGCCCTGGAGCGCGCCCCTG
CCCATAGCAGGGCTCGCCCCAGTCGCCGAGGCGCGTCCAGCTGCTGCGGCTGACAGGGGC
CGCGCGCGCGGGAGTTGTCAGGGTCGCGGCAGCCGCACCTGCGCGGGTGGCCAGCTCTAG
GTCCCCGCAGGGTCCGGCGGACGCCGAGGTCCGAGGAGCGGGTGCGGGCGCAGGCGGGGC
CCCGCAGGGCCACCTCCTCGCCCCGCGGCCGCCGCTGGAAGATGTCTCAGGAGAGGCCCA
CGTTCTACCGGCAGGAGCTGAACAAGACAATCTGGGAGGTACCCGAGCGTTACCAGAACC
TGTCCCCGGTGGGCTCCGGCGCCTATGGCTCCGTGTGTTCTGCTTTTGACACAAAAACTG
GGTTACGTGTTGCAGTGAAGAAGCTATCCAGACCATTTCAATCCATTATTCATGCCAAAA
GTTAGTTCAGTACTTACTTACTGTTGGACGTTTATGTTCTCTTATAGGTGATTGGTCTGT
TGGATGTTTTCACACCTGCAAGGTCTCTGGAGGAATTCAGTGATGTGTACCTGGTGACCC
ATCTCATGGGGGCAGATCTGAACAACATTGTGAAATGTCAGAAGCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTGCGGGCGCTGCAGCTGGAGCGGTAGTCCCGCGGCGCAAACCGGAGTCGGCCTGGA
CTGAAGCGGGTGCAGGGAGAGTGTGGTGGGCGCAGCTTTGAGCCCTGGAGCGCGCCCCTG
CCCATAGCAGGGCTCGCCCCAGTCGCCGAGGCGCGTCCAGCTGCTGCGGCTGACAGGGGC
CGCGCGCGCGGGAGTTGTCAGGGTCGCGGCAGCCGCACCTGCGCGGGTGGCCAGCTCTAG
GTCCCCGCAGGGTCCGGCGGACGCCGAGGTCCGAGGAGCGGGTGCGGGCGCAGGCGGGGC
CCCGCAGGGCCACCTCCTCGCCCCGCGGCCGCCGCTGGAAGATGTCTCAGGAGAGGCCCA
CGTTCTACCGGCAGGAGCTGAACAAGACAATCTGGGAGGTACCCGAGCGTTACCAGAACC
TGTCCCCGGTGGGCTCCGGCGCCTATGGCTCCGTGTGTTCTGCTTTTGACACAAAAACTG
GGTTACGTGTTGCAGTGAAGAAGCTATCCAGACCATTTCAATCCATTATTCATGCCAAAA
GTTAGTTCAGTACTTACTTACTGTTGGACGTTTATGTTCTCTTATAGGTGATTGGTCTGT
TGGATGTTTTCACACCTGCAAGGTCTCTGGAGGAATTCAGTGATGTGTACCTGGTGACCC
ATCTCATGGGGGCAGATCTGAACAACATTGTGAAATGTCAGAAGCTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|53129667|emb|CAG31403.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|53129667|emb|CAG31403.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               544-648, - strand, RNAz p=0.558202

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               544-648, - strand, RNAz p=0.558202

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-457, gnl|bosTau2|chr23 (8334850-8335316)
               

               
               2-457, gnl|Hg17|chr6 (36103571-36104028)
               

               
               2-457, gnl|Mm7|chr17 (26877514-26877931)
               


               
               544-648, gnl|bosTau2|chr23 (8367339-8367443)
               

               
               544-648, gnl|Hg17|chr6 (36135000-36135104)
               

               
               544-648, gnl|Mm7|chr17 (26901460-26901564)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-457, gnl|bosTau2|chr23 (8334850-8335316)
               

               
               2-457, gnl|Hg17|chr6 (36103571-36104028)
               

               
               2-457, gnl|Mm7|chr17 (26877514-26877931)
               


               
               544-648, gnl|bosTau2|chr23 (8367339-8367443)
               

               
               544-648, gnl|Hg17|chr6 (36135000-36135104)
               

               
               544-648, gnl|Mm7|chr17 (26901460-26901564)

	2-457, gnl\|bosTau2\|chr23 (8334850-8335316)
	2-457, gnl\|Hg17\|chr6 (36103571-36104028)
	2-457, gnl\|Mm7\|chr17 (26877514-26877931)

	544-648, gnl\|bosTau2\|chr23 (8367339-8367443)
	544-648, gnl\|Hg17\|chr6 (36135000-36135104)
	544-648, gnl\|Mm7\|chr17 (26901460-26901564)