Non-Coding RNA Search

Ss1.1-Thy1-THY010029A06.5

Sequence:


               
               TTATCATTTGAATGAGAATAGAGGAAAAGTCTATTACAATCGGCATAATTTCCGTTCCTT
GATCAAATGACAAGTTGGACTGTTTATTCCCTAGTGATTATGAAACCTACTATAAAATTT
CCTCTCTTTTTCTCTCTTTCTCTCTTTTCCCTGTAGTTACATATTGTTTTTGGATCTAGT
GGCAGTAGTATTGGTGGTTGTTTGGTTTTGGAATGCTCTTTCTTAATTCCCAAAAGCCCT
GCATATTTTCCAAAGGTGTCTCAAGAATAAATCATGCCCTCAGACCTATGACGTTTTTGT
TTCTACAAGTATAGAGCACCCTTTCATTTGGTCTTCCTTTGAGGTAGAGTCTGTTCCCTG
GAACACCCTTTTCTCTTATCCTCAGATCTGGATTCAGGCTGCCTTCCTCAGTGTCTGCTA
TTGCCCTCCTCCACTGGCATCACGTACATGAGGATGCTGCATATAGATTATTTGATGTGA
TGAAGTCTCCAGCTCCAGGCAGGTCTTCCCTGACTCCTCCAAACTTAAAGCTTTTCTCTT
TTCCCAAAGAGCAGATAATTATTTCTTGGGGGGAGGGGGCATGAAAGAAGAGCCACAGTG
GTGTGGGATATGGAGGGGAGGAGGGCAACAGGGATCTGTACACAAAGGAAGGGGACTTCC
ACTGAATGAGCAGCATACAACAAAGAAAGCCTTTTCCTAATTACACATCTTATCTAAGTG
TTTGAGAGTCACTTACGGATTTATTTAGGGGAAATTCTTAAGTAGAAAAACTCCTAAAGA
GAAACTTGACCATGAAATCTTTACCAGAAGGGTTTGTGGATAATAGAATAACATGAATAA
CTTTCAGGTGTCAGAAATGAAAACACTGACAACTTTCTTAGGAAGAAAATAAGACTAGAA
ATTTGCCAAAATGATAAAGGATGGTTGGCTCTCTGGAGATACCAGTTTACTTATCCTGGC
TATTTCAGAAGGAGAAAAAAGTATTCACCATTTAATGAGCATTATGATTAACCTTATTCT
GTAATAATTGGGAAGTTCTGTTAACTCCAAGTATTGCGTTTAGCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATCATTTGAATGAGAATAGAGGAAAAGTCTATTACAATCGGCATAATTTCCGTTCCTT
GATCAAATGACAAGTTGGACTGTTTATTCCCTAGTGATTATGAAACCTACTATAAAATTT
CCTCTCTTTTTCTCTCTTTCTCTCTTTTCCCTGTAGTTACATATTGTTTTTGGATCTAGT
GGCAGTAGTATTGGTGGTTGTTTGGTTTTGGAATGCTCTTTCTTAATTCCCAAAAGCCCT
GCATATTTTCCAAAGGTGTCTCAAGAATAAATCATGCCCTCAGACCTATGACGTTTTTGT
TTCTACAAGTATAGAGCACCCTTTCATTTGGTCTTCCTTTGAGGTAGAGTCTGTTCCCTG
GAACACCCTTTTCTCTTATCCTCAGATCTGGATTCAGGCTGCCTTCCTCAGTGTCTGCTA
TTGCCCTCCTCCACTGGCATCACGTACATGAGGATGCTGCATATAGATTATTTGATGTGA
TGAAGTCTCCAGCTCCAGGCAGGTCTTCCCTGACTCCTCCAAACTTAAAGCTTTTCTCTT
TTCCCAAAGAGCAGATAATTATTTCTTGGGGGGAGGGGGCATGAAAGAAGAGCCACAGTG
GTGTGGGATATGGAGGGGAGGAGGGCAACAGGGATCTGTACACAAAGGAAGGGGACTTCC
ACTGAATGAGCAGCATACAACAAAGAAAGCCTTTTCCTAATTACACATCTTATCTAAGTG
TTTGAGAGTCACTTACGGATTTATTTAGGGGAAATTCTTAAGTAGAAAAACTCCTAAAGA
GAAACTTGACCATGAAATCTTTACCAGAAGGGTTTGTGGATAATAGAATAACATGAATAA
CTTTCAGGTGTCAGAAATGAAAACACTGACAACTTTCTTAGGAAGAAAATAAGACTAGAA
ATTTGCCAAAATGATAAAGGATGGTTGGCTCTCTGGAGATACCAGTTTACTTATCCTGGC
TATTTCAGAAGGAGAAAAAAGTATTCACCATTTAATGAGCATTATGATTAACCTTATTCT
GTAATAATTGGGAAGTTCTGTTAACTCCAAGTATTGCGTTTAGCCCCA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               1-119, - strand, RNAz p=0.859438
               

               
               279-393, - strand, RNAz p=0.651084
               

               
               514-630, - strand, RNAz p=0.999045
               

               
               711-830, + strand, RNAz p=0.990171

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.859438
               

               
               279-393, - strand, RNAz p=0.651084
               

               
               514-630, - strand, RNAz p=0.999045
               

               
               711-830, + strand, RNAz p=0.990171

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1015, gnl|bosTau2|chr22 (14564850-14563850)
               

               
               1-1015, gnl|Mm7|chr6 (113283248-113284136)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1015, gnl|bosTau2|chr22 (14564850-14563850)
               

               
               1-1015, gnl|Mm7|chr6 (113283248-113284136)

	1-119, - strand, RNAz p=0.859438
	279-393, - strand, RNAz p=0.651084
	514-630, - strand, RNAz p=0.999045
	711-830, + strand, RNAz p=0.990171

	1-1015, gnl\|bosTau2\|chr22 (14564850-14563850)
	1-1015, gnl\|Mm7\|chr6 (113283248-113284136)