Non-Coding RNA Search

Ss1.1-Thy1-THY010030D02.5

Sequence:


               
               CGCAGTGGCGGCGGCGGCGGCGCCAGTCCGGCCAGCTGGACTGCAGCGCACGTCCCGGTG
TCTGACTCTCTTCGGCTTGCCGCGGAGTTCCTCGGATTCTGGGTTTGGTGCCCGGCGCTG
GGAGGGGGCTGCGCCCTGCTGAGGCGCGCAGCCTTGCAATTCCACGTTACGTATCGCAGT
GGCGGCGGCGGCGGCGCCAGTCCGGCCAGCTGGACTGCAGCGCACGTCCCGGTGTCTGAC
TCTCTTCGGCTTGCCGCGGAGTTCCTCGGATTCTGGGTTTGGTCAGTCCTGCCCCAAGGG
CAACCTCATTCCCCATAGTTCTGGTCTACCTGCTGCTCATCTTTGTGGGGCAGAAGTACA
TGAAGTCACGGAAGGGCTTCAACCTGCAAGGGCCTCTCATCCTTTGGTCCTTCTGCCTTA
CGGTCTTCAGTATCCTCGGGGCAGTGAGGACATGGGGATTTATGGTGGCCGTGCTCCTTA
GGGGGAGCCTAAAGCAAACTGTGTGCTTCACCAACTCCACTGACAATCCCATAATCAAAT
TCTGGTCCTGCCTCTTTGTTCTCAGCAAGATCATTGAACTTGGAGACACGGCCTTCATCA
TCCTGCGAAAGCGGCCACTCATCTTTGTGCACTGGTACCACCACAGCACAGTGCTACTGT
ATTCAAGCTTTGGATACAAGGACAAGGTGGCTGCGGGCGGCTGGTTCATGACTATGAACT
ACGGTGTACATGCCATCATGTACACCTACTATACTCTGAGAGCTGCCAAAGTGAAGCCCC
CCAAGTGGTTTCCCATGTTCATCACCAGCCTGCAGATCCTGCAGATGTTTTTGGGAGCAA
CTGTCAGTATCCTGACTTACATCTGGAAGCAGGAACAGGGATGCCACACCACAACGGAAC
AACTCTTCTGGTCCTTCATGTTGTATATGACCTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGTGGCGGCGGCGGCGGCGCCAGTCCGGCCAGCTGGACTGCAGCGCACGTCCCGGTG
TCTGACTCTCTTCGGCTTGCCGCGGAGTTCCTCGGATTCTGGGTTTGGTGCCCGGCGCTG
GGAGGGGGCTGCGCCCTGCTGAGGCGCGCAGCCTTGCAATTCCACGTTACGTATCGCAGT
GGCGGCGGCGGCGGCGCCAGTCCGGCCAGCTGGACTGCAGCGCACGTCCCGGTGTCTGAC
TCTCTTCGGCTTGCCGCGGAGTTCCTCGGATTCTGGGTTTGGTCAGTCCTGCCCCAAGGG
CAACCTCATTCCCCATAGTTCTGGTCTACCTGCTGCTCATCTTTGTGGGGCAGAAGTACA
TGAAGTCACGGAAGGGCTTCAACCTGCAAGGGCCTCTCATCCTTTGGTCCTTCTGCCTTA
CGGTCTTCAGTATCCTCGGGGCAGTGAGGACATGGGGATTTATGGTGGCCGTGCTCCTTA
GGGGGAGCCTAAAGCAAACTGTGTGCTTCACCAACTCCACTGACAATCCCATAATCAAAT
TCTGGTCCTGCCTCTTTGTTCTCAGCAAGATCATTGAACTTGGAGACACGGCCTTCATCA
TCCTGCGAAAGCGGCCACTCATCTTTGTGCACTGGTACCACCACAGCACAGTGCTACTGT
ATTCAAGCTTTGGATACAAGGACAAGGTGGCTGCGGGCGGCTGGTTCATGACTATGAACT
ACGGTGTACATGCCATCATGTACACCTACTATACTCTGAGAGCTGCCAAAGTGAAGCCCC
CCAAGTGGTTTCCCATGTTCATCACCAGCCTGCAGATCCTGCAGATGTTTTTGGGAGCAA
CTGTCAGTATCCTGACTTACATCTGGAAGCAGGAACAGGGATGCCACACCACAACGGAAC
AACTCTTCTGGTCCTTCATGTTGTATATGACCTATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57107553|ref|XP_543985.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57107553|ref|XP_543985.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               311-430, + strand, RNAz p=0.839334
               

               
               621-820, - strand, RNAz p=0.99178

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-430, + strand, RNAz p=0.839334
               

               
               621-820, - strand, RNAz p=0.99178

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

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               289-430, gnl|bosTau2|chr26 (15363133-15363275)
               

               
               289-430, gnl|canFam2|chr28 (17758249-17758432)
               

               
               289-430, gnl|danRer3|chrUn (156462742-156462896)
               

               
               289-430, gnl|echTel1|scaffold_238665 (4441-4618)
               

               
               289-430, gnl|fr1|chrUn (37177053-37177194)
               

               
               289-430, gnl|galGal2|chr6 (16029356-16029540)
               

               
               289-430, gnl|hg17|chr10 (103977350-103977524)
               

               
               289-430, gnl|Hg17|chr10 (103977362-103977504)
               

               
               289-430, gnl|mm7|chr19 (46029739-46029916)
               

               
               289-430, gnl|Mm7|chr19 (46029747-46029889)
               

               
               289-430, gnl|monDom2|scaffold_14 (61131563-61131393)
               

               
               289-430, gnl|oryCun1|scaffold_191181 (9146-8959)
               

               
               289-430, gnl|panTro1|chr8 (105733205-105733379)
               

               
               289-430, gnl|rheMac2|chr9 (101883101-101883276)
               

               
               289-430, gnl|rn3|chr1 (251613646-251613821)
               

               
               289-430, gnl|tetNig1|chr2 (1640435-1640563)
               

               
               289-430, gnl|xenTro1|scaffold_507 (651415-651575)
               


               
               582-936, gnl|bosTau2|chr26 (15364322-15364676)
               

               
               582-936, gnl|Hg17|chr10 (103978571-103978925)
               

               
               582-936, gnl|Mm7|chr19 (46031008-46031362)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               289-430, gnl|bosTau2|chr26 (15363133-15363275)
               

               
               289-430, gnl|canFam2|chr28 (17758249-17758432)
               

               
               289-430, gnl|danRer3|chrUn (156462742-156462896)
               

               
               289-430, gnl|echTel1|scaffold_238665 (4441-4618)
               

               
               289-430, gnl|fr1|chrUn (37177053-37177194)
               

               
               289-430, gnl|galGal2|chr6 (16029356-16029540)
               

               
               289-430, gnl|hg17|chr10 (103977350-103977524)
               

               
               289-430, gnl|Hg17|chr10 (103977362-103977504)
               

               
               289-430, gnl|mm7|chr19 (46029739-46029916)
               

               
               289-430, gnl|Mm7|chr19 (46029747-46029889)
               

               
               289-430, gnl|monDom2|scaffold_14 (61131563-61131393)
               

               
               289-430, gnl|oryCun1|scaffold_191181 (9146-8959)
               

               
               289-430, gnl|panTro1|chr8 (105733205-105733379)
               

               
               289-430, gnl|rheMac2|chr9 (101883101-101883276)
               

               
               289-430, gnl|rn3|chr1 (251613646-251613821)
               

               
               289-430, gnl|tetNig1|chr2 (1640435-1640563)
               

               
               289-430, gnl|xenTro1|scaffold_507 (651415-651575)
               


               
               582-936, gnl|bosTau2|chr26 (15364322-15364676)
               

               
               582-936, gnl|Hg17|chr10 (103978571-103978925)
               

               
               582-936, gnl|Mm7|chr19 (46031008-46031362)

	311-430, + strand, RNAz p=0.839334
	621-820, - strand, RNAz p=0.99178

	289-430, gnl\|bosTau2\|chr26 (15363133-15363275)
	289-430, gnl\|canFam2\|chr28 (17758249-17758432)
	289-430, gnl\|danRer3\|chrUn (156462742-156462896)
	289-430, gnl\|echTel1\|scaffold_238665 (4441-4618)
	289-430, gnl\|fr1\|chrUn (37177053-37177194)
	289-430, gnl\|galGal2\|chr6 (16029356-16029540)
	289-430, gnl\|hg17\|chr10 (103977350-103977524)
	289-430, gnl\|Hg17\|chr10 (103977362-103977504)
	289-430, gnl\|mm7\|chr19 (46029739-46029916)
	289-430, gnl\|Mm7\|chr19 (46029747-46029889)
	289-430, gnl\|monDom2\|scaffold_14 (61131563-61131393)
	289-430, gnl\|oryCun1\|scaffold_191181 (9146-8959)
	289-430, gnl\|panTro1\|chr8 (105733205-105733379)
	289-430, gnl\|rheMac2\|chr9 (101883101-101883276)
	289-430, gnl\|rn3\|chr1 (251613646-251613821)
	289-430, gnl\|tetNig1\|chr2 (1640435-1640563)
	289-430, gnl\|xenTro1\|scaffold_507 (651415-651575)

	582-936, gnl\|bosTau2\|chr26 (15364322-15364676)
	582-936, gnl\|Hg17\|chr10 (103978571-103978925)
	582-936, gnl\|Mm7\|chr19 (46031008-46031362)