Non-Coding RNA Search

Ss1.1-Thy1-THY010035B02.5

Sequence:


               
               ACAGTCCGAATTAACCCGCCTGCGCCTCTTGAAGGCCGGATGTTTGAAGCCTCCACCACC
TCCCCCTACATTACAGCTATTTCTCCTCTTGCCCCCACCTCCCCCAGGAGGCCGGTGGGG
CTGATAGCCATTACGTGGTCGAGGAGGAGCAAGGGGGCCCAGTTCTGTTCCGCCCCCTCC
CCGGCGCTCCTCCCCCACGTCCGGGGGAGCGGCTAGCCCCTGGGGATCCGACAAGCAGGC
CTCTCCGGTCGACTGGGCCTGGGGGCCGCCCCCTCGCTGCTGCTGCGACTGGCCGCCCCG
AGGGGTGGAGGTAGCCCCGGGGCTCTCCTTGCCTGCCCCAGAAGCTGGGGACCCCGCCGA
GTGTGCGCGCGGGCCCGGCCCACGCTGCGTCCCGCCGCGGAGCTCCCCGGAGGCGACCTC
TCGGTGTGGTTGCACCGTGGGGCCGCCCCCTCCGCCCGACTCATCTTTGAGCGGCGGTGG
CGGGGCCGGCACCAGAAACGGCTCCTTCTCCGCCGCCATCTCGATCATTTCCTCCCCTTA
TTCCGTCCCAGTCGAGGGCAACCAGGGGGACCAGGGGGCTTAACCCCCCCTTCCTAAGAC
CGCGCTCCCTTCCCCCCTTTCCTGAGTGCGCGCGCAGTTCCGCTTCTCGCCTAGTCTCGT
CCCCAAGCGCCTCCCCCGAAGCGCGCCCCACTCGCCCGCGAGACCAAAACAAGATGCCCG
CGAGACCCGAACTCGAGGAACCAACCGCGCGTGCGCCGACTCCTTTCTCCTCTACCACTA
CCGCTTCGCCGCGAGCGCGCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTCCGAATTAACCCGCCTGCGCCTCTTGAAGGCCGGATGTTTGAAGCCTCCACCACC
TCCCCCTACATTACAGCTATTTCTCCTCTTGCCCCCACCTCCCCCAGGAGGCCGGTGGGG
CTGATAGCCATTACGTGGTCGAGGAGGAGCAAGGGGGCCCAGTTCTGTTCCGCCCCCTCC
CCGGCGCTCCTCCCCCACGTCCGGGGGAGCGGCTAGCCCCTGGGGATCCGACAAGCAGGC
CTCTCCGGTCGACTGGGCCTGGGGGCCGCCCCCTCGCTGCTGCTGCGACTGGCCGCCCCG
AGGGGTGGAGGTAGCCCCGGGGCTCTCCTTGCCTGCCCCAGAAGCTGGGGACCCCGCCGA
GTGTGCGCGCGGGCCCGGCCCACGCTGCGTCCCGCCGCGGAGCTCCCCGGAGGCGACCTC
TCGGTGTGGTTGCACCGTGGGGCCGCCCCCTCCGCCCGACTCATCTTTGAGCGGCGGTGG
CGGGGCCGGCACCAGAAACGGCTCCTTCTCCGCCGCCATCTCGATCATTTCCTCCCCTTA
TTCCGTCCCAGTCGAGGGCAACCAGGGGGACCAGGGGGCTTAACCCCCCCTTCCTAAGAC
CGCGCTCCCTTCCCCCCTTTCCTGAGTGCGCGCGCAGTTCCGCTTCTCGCCTAGTCTCGT
CCCCAAGCGCCTCCCCCGAAGCGCGCCCCACTCGCCCGCGAGACCAAAACAAGATGCCCG
CGAGACCCGAACTCGAGGAACCAACCGCGCGTGCGCCGACTCCTTTCTCCTCTACCACTA
CCGCTTCGCCGCGAGCGCGCACTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-196, - strand, RNAz p=0.902747
               

               
               394-620, - strand, RNAz p=0.997481
               

               
               418-698, - strand, RNAz p=0.975128

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-196, - strand, RNAz p=0.902747
               

               
               394-620, - strand, RNAz p=0.997481
               

               
               418-698, - strand, RNAz p=0.975128

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               607-724, - strand, RNAmicro p=0.91723

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               607-724, - strand, RNAmicro p=0.91723

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               394-620, BP160704 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP160704.1|), blast E-value=0, identity=96.92% 
               

               
               394-620, BW976416 full-length enriched swine cDNA library, adult intestine 
(dbj|BW976416.1|), blast E-value=0, identity=96.92% 
               

               
               394-579, DA201419 BRAWH2 Homo sapiens cDNA clone BRAWH2006005 5', mRNA 
(dbj|DA201419.1|), blast E-value=0, identity=94.09% 
               

               
               394-579, DB456947 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB456947.1|), blast E-value=0, identity=94.09% 
               

               
               394-579, AL527845 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens 
(emb|AL527845.3|), blast E-value=0, identity=94.09% 
               

               
               394-579, BX361601 Homo sapiens T CELLS (JURKAT CELL LINE) COT 10-NORMALIZED 
(emb|BX361601.2|), blast E-value=0, identity=94.09%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               394-620, BP160704 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP160704.1|), blast E-value=0, identity=96.92% 
               

               
               394-620, BW976416 full-length enriched swine cDNA library, adult intestine 
(dbj|BW976416.1|), blast E-value=0, identity=96.92% 
               

               
               394-579, DA201419 BRAWH2 Homo sapiens cDNA clone BRAWH2006005 5', mRNA 
(dbj|DA201419.1|), blast E-value=0, identity=94.09% 
               

               
               394-579, DB456947 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB456947.1|), blast E-value=0, identity=94.09% 
               

               
               394-579, AL527845 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens 
(emb|AL527845.3|), blast E-value=0, identity=94.09% 
               

               
               394-579, BX361601 Homo sapiens T CELLS (JURKAT CELL LINE) COT 10-NORMALIZED 
(emb|BX361601.2|), blast E-value=0, identity=94.09%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_019606, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_019606, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-802, gnl|bosTau2|chr25 (32520180-32520993)
               

               
               1-802, gnl|canFam2|chr6 (12245541-12244829)
               

               
               1-802, gnl|echTel1|scaffold_314793 (991-279)
               

               
               1-802, gnl|hg17|chr7 (99671820-99672532)
               

               
               1-802, gnl|Hg17|chr7 (99672823-99672015)
               

               
               1-802, gnl|loxAfr1|scaffold_23018 (30320-29634)
               

               
               1-802, gnl|mm7|chr5 (136704565-136703879)
               

               
               1-802, gnl|Mm7|chr5 (136703609-136704348)
               

               
               1-802, gnl|monDom2|scaffold_66 (2203326-2203939)
               

               
               1-802, gnl|panTro1|chr6 (101456176-101456889)
               

               
               1-802, gnl|rheMac2|chr3 (47601418-47602134)
               

               
               1-802, gnl|rn3|chr12 (19843117-19842418)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-802, gnl|bosTau2|chr25 (32520180-32520993)
               

               
               1-802, gnl|canFam2|chr6 (12245541-12244829)
               

               
               1-802, gnl|echTel1|scaffold_314793 (991-279)
               

               
               1-802, gnl|hg17|chr7 (99671820-99672532)
               

               
               1-802, gnl|Hg17|chr7 (99672823-99672015)
               

               
               1-802, gnl|loxAfr1|scaffold_23018 (30320-29634)
               

               
               1-802, gnl|mm7|chr5 (136704565-136703879)
               

               
               1-802, gnl|Mm7|chr5 (136703609-136704348)
               

               
               1-802, gnl|monDom2|scaffold_66 (2203326-2203939)
               

               
               1-802, gnl|panTro1|chr6 (101456176-101456889)
               

               
               1-802, gnl|rheMac2|chr3 (47601418-47602134)
               

               
               1-802, gnl|rn3|chr12 (19843117-19842418)

	40-196, - strand, RNAz p=0.902747
	394-620, - strand, RNAz p=0.997481
	418-698, - strand, RNAz p=0.975128

	394-620, BP160704 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP160704.1\|), blast E-value=0, identity=96.92%
	394-620, BW976416 full-length enriched swine cDNA library, adult intestine (dbj\|BW976416.1\|), blast E-value=0, identity=96.92%
	394-579, DA201419 BRAWH2 Homo sapiens cDNA clone BRAWH2006005 5', mRNA (dbj\|DA201419.1\|), blast E-value=0, identity=94.09%
	394-579, DB456947 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB456947.1\|), blast E-value=0, identity=94.09%
	394-579, AL527845 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens (emb\|AL527845.3\|), blast E-value=0, identity=94.09%
	394-579, BX361601 Homo sapiens T CELLS (JURKAT CELL LINE) COT 10-NORMALIZED (emb\|BX361601.2\|), blast E-value=0, identity=94.09%

	1-802, gnl\|bosTau2\|chr25 (32520180-32520993)
	1-802, gnl\|canFam2\|chr6 (12245541-12244829)
	1-802, gnl\|echTel1\|scaffold_314793 (991-279)
	1-802, gnl\|hg17\|chr7 (99671820-99672532)
	1-802, gnl\|Hg17\|chr7 (99672823-99672015)
	1-802, gnl\|loxAfr1\|scaffold_23018 (30320-29634)
	1-802, gnl\|mm7\|chr5 (136704565-136703879)
	1-802, gnl\|Mm7\|chr5 (136703609-136704348)
	1-802, gnl\|monDom2\|scaffold_66 (2203326-2203939)
	1-802, gnl\|panTro1\|chr6 (101456176-101456889)
	1-802, gnl\|rheMac2\|chr3 (47601418-47602134)
	1-802, gnl\|rn3\|chr12 (19843117-19842418)