Non-Coding RNA Search

Ss1.1-Thy1-THY010036C04.5

Sequence:


               
               AGAGGTGTGGCCGGGGAAGGTGCGCTGAGGCGATTTGGAGGCGCAGCGCCCGGGAGTTGA
GGTGAGGTCGGGCTGAGCCGAGCCAGGCGAGGTGAGGCGGGCGTTCGCGGCGATGGTTGC
TTTTGCTGCCGTGGTGGCTTTCGAGGATGCGGGTGCTGGTCAGGGGCTCGGGTTGACGGA
GTCACTCCTTTCTGCCTTTTCCAGGCGCCTTAGGCCAGGGTCTCCCTCCGCAGGCCCTGA
CTAGTGCCCCAGGCTTTTACGTGGGGACCTTGAAGATCTCATAGGGCAGTTAGTATTATG
TCCATTTTATTAATAAAGACGAGGAAACCGAATCGCAGAGAACGGTGGCAAATTGCCCAG
GATGACACAATCGATAACCACCAGAGGTTCAGTCTTTTCCGTTATGGAAGTCTGCATTCC
AAGCTTCCTGATTTTTTTTTTTTTTTTAATACAGTATAGCTGGCTCTTGCTGAGGGAAGG
GTTGTGTGGAAATAAATCAGGAGGTGTTATGAGTCGATTTAGAAATTTCTATATCACTAT
GGGTTCTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGTGTGGCCGGGGAAGGTGCGCTGAGGCGATTTGGAGGCGCAGCGCCCGGGAGTTGA
GGTGAGGTCGGGCTGAGCCGAGCCAGGCGAGGTGAGGCGGGCGTTCGCGGCGATGGTTGC
TTTTGCTGCCGTGGTGGCTTTCGAGGATGCGGGTGCTGGTCAGGGGCTCGGGTTGACGGA
GTCACTCCTTTCTGCCTTTTCCAGGCGCCTTAGGCCAGGGTCTCCCTCCGCAGGCCCTGA
CTAGTGCCCCAGGCTTTTACGTGGGGACCTTGAAGATCTCATAGGGCAGTTAGTATTATG
TCCATTTTATTAATAAAGACGAGGAAACCGAATCGCAGAGAACGGTGGCAAATTGCCCAG
GATGACACAATCGATAACCACCAGAGGTTCAGTCTTTTCCGTTATGGAAGTCTGCATTCC
AAGCTTCCTGATTTTTTTTTTTTTTTTAATACAGTATAGCTGGCTCTTGCTGAGGGAAGG
GTTGTGTGGAAATAAATCAGGAGGTGTTATGAGTCGATTTAGAAATTTCTATATCACTAT
GGGTTCTTGAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               157-272, - strand, RNAz p=0.873639
               

               
               422-538, + strand, RNAz p=0.907624

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-272, - strand, RNAz p=0.873639
               

               
               422-538, + strand, RNAz p=0.907624

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-538, gnl|bosTau2|chr19 (17815899-17816437)
               

               
               1-538, gnl|Mm7|chr11 (75007257-75006803)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-538, gnl|bosTau2|chr19 (17815899-17816437)
               

               
               1-538, gnl|Mm7|chr11 (75007257-75006803)

	157-272, - strand, RNAz p=0.873639
	422-538, + strand, RNAz p=0.907624

	1-538, gnl\|bosTau2\|chr19 (17815899-17816437)
	1-538, gnl\|Mm7\|chr11 (75007257-75006803)