Non-Coding RNA Search

Ss1.1-Thy1-THY010039D09.5

Sequence:


               
               CTTAGGAAGGGAACTGGCCCTCTCTGGTCATTAGCTTCTTTATTTAAAAAAACAGTTGTT
GGAGTTCTCGTCATGGCTCAGTGGTTAAGAATCCAACTAGGAACCTCCTCATGCCGCAAG
TGGGGCCCTAGAAAATACAGAAATACAAAAAAAAATAAAAAAAATTTTAAAAACCAGTTG
GTGCCAATTCAAGCTCTGAGTTTCCTTGGGGAAGAGCCACCCCCTGCCTTTTATAAAACA
AGCATCACTGGACATGGGTTCAATTTGCTCTGTGACCTATACCACAGCTCATAGCAATGC
TGGAACCTTGACCCACTGAGCGAGGCCAGGGATCGAACCTGTGTCCTCATGGATACTAGT
CAGATTCGTTTCCACTGAGCCATGATGGGAACTCCCTGAACTGTGATTTTAGAAACTGTC
TCTGGGGCAACTCTTGTCACTTTTCCCTCTCTGAGACACCTGCTTCATCCAGGGAGACTC
AAGACCTGCCAGCCCGAGCCTTCTCACTCACCATGGCTGAATGCCTTCGGATTTTTGTTC
ATGCCATCTTCTACGTGGGCAAAGGAACACGGGCCCGGCCAGATGTCCACCTCTGGAAGG
CCCTTAGCCACCGAGGGCAGCCAGGAAAACAGGCCTGCCCTAAAGTGCGCCGCATCTTGG
ACATTTGGGCCAGTGGTCGTGGCATTGTCTCCCTGCAGTGCTTCCAGCATGTGGTTGCCG
TGGAGGCTTACACTCGAGAAGCATGTCTTGTGGATGCTTTAGGGATCCGGACCCTGACCA
ACCAGAAGCAAGGACACTACTACGGAGTAGTGGCTGACTGGCCACCCACCCGGCGCCGCC
GCTTGGGGGTGCATCTGCTGCACCGTGCCCTCCTTGTCTTCCTGGCTGAGGGTGAGCGAG
AGCTACGGCCCCAGGACATCCAGGCCCGTGGCCGAGCACTGGGGAATTGGCTATCCAGCC
TTGGTAGAGATCAGGGTGTCTGAATGTTCAGCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAGGAAGGGAACTGGCCCTCTCTGGTCATTAGCTTCTTTATTTAAAAAAACAGTTGTT
GGAGTTCTCGTCATGGCTCAGTGGTTAAGAATCCAACTAGGAACCTCCTCATGCCGCAAG
TGGGGCCCTAGAAAATACAGAAATACAAAAAAAAATAAAAAAAATTTTAAAAACCAGTTG
GTGCCAATTCAAGCTCTGAGTTTCCTTGGGGAAGAGCCACCCCCTGCCTTTTATAAAACA
AGCATCACTGGACATGGGTTCAATTTGCTCTGTGACCTATACCACAGCTCATAGCAATGC
TGGAACCTTGACCCACTGAGCGAGGCCAGGGATCGAACCTGTGTCCTCATGGATACTAGT
CAGATTCGTTTCCACTGAGCCATGATGGGAACTCCCTGAACTGTGATTTTAGAAACTGTC
TCTGGGGCAACTCTTGTCACTTTTCCCTCTCTGAGACACCTGCTTCATCCAGGGAGACTC
AAGACCTGCCAGCCCGAGCCTTCTCACTCACCATGGCTGAATGCCTTCGGATTTTTGTTC
ATGCCATCTTCTACGTGGGCAAAGGAACACGGGCCCGGCCAGATGTCCACCTCTGGAAGG
CCCTTAGCCACCGAGGGCAGCCAGGAAAACAGGCCTGCCCTAAAGTGCGCCGCATCTTGG
ACATTTGGGCCAGTGGTCGTGGCATTGTCTCCCTGCAGTGCTTCCAGCATGTGGTTGCCG
TGGAGGCTTACACTCGAGAAGCATGTCTTGTGGATGCTTTAGGGATCCGGACCCTGACCA
ACCAGAAGCAAGGACACTACTACGGAGTAGTGGCTGACTGGCCACCCACCCGGCGCCGCC
GCTTGGGGGTGCATCTGCTGCACCGTGCCCTCCTTGTCTTCCTGGCTGAGGGTGAGCGAG
AGCTACGGCCCCAGGACATCCAGGCCCGTGGCCGAGCACTGGGGAATTGGCTATCCAGCC
TTGGTAGAGATCAGGGTGTCTGAATGTTCAGCTGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|27370112|ref|NP_766344.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27370112|ref|NP_766344.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               516-633, - strand, RNAz p=0.684513

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               516-633, - strand, RNAz p=0.684513

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               401-633, gnl|bosTau2|chr7 (2803777-2803545)
               

               
               401-633, gnl|Hg17|chr19 (17257167-17257400)
               


               
               761-996, gnl|bosTau2|chr7 (2803056-2802820)
               

               
               761-996, gnl|canFam2|chr20 (48465674-48465489)
               

               
               761-996, gnl|danRer3|chrNA (4584006-4584168)
               

               
               761-996, gnl|echTel1|scaffold_104934 (2594-2779)
               

               
               761-996, gnl|fr1|chrUn (169272601-169272768)
               

               
               761-996, gnl|hg17|chr19 (17258180-17258365)
               

               
               761-996, gnl|Hg17|chr19 (17258187-17258417)
               

               
               761-996, gnl|loxAfr1|scaffold_30283 (8647-8836)
               

               
               761-996, gnl|mm7|chr8 (69876113-69876298)
               

               
               761-996, gnl|Mm7|chr8 (69876120-69876351)
               

               
               761-996, gnl|monDom2|scaffold_100 (4339619-4339803)
               

               
               761-996, gnl|panTro1|chr20 (17954398-17954583)
               

               
               761-996, gnl|rheMac2|chr19 (16842220-16842405)
               

               
               761-996, gnl|rn3|chr16 (18568826-18569011)
               

               
               761-996, gnl|tetNig1|chr1 (13941368-13941534)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               401-633, gnl|bosTau2|chr7 (2803777-2803545)
               

               
               401-633, gnl|Hg17|chr19 (17257167-17257400)
               


               
               761-996, gnl|bosTau2|chr7 (2803056-2802820)
               

               
               761-996, gnl|canFam2|chr20 (48465674-48465489)
               

               
               761-996, gnl|danRer3|chrNA (4584006-4584168)
               

               
               761-996, gnl|echTel1|scaffold_104934 (2594-2779)
               

               
               761-996, gnl|fr1|chrUn (169272601-169272768)
               

               
               761-996, gnl|hg17|chr19 (17258180-17258365)
               

               
               761-996, gnl|Hg17|chr19 (17258187-17258417)
               

               
               761-996, gnl|loxAfr1|scaffold_30283 (8647-8836)
               

               
               761-996, gnl|mm7|chr8 (69876113-69876298)
               

               
               761-996, gnl|Mm7|chr8 (69876120-69876351)
               

               
               761-996, gnl|monDom2|scaffold_100 (4339619-4339803)
               

               
               761-996, gnl|panTro1|chr20 (17954398-17954583)
               

               
               761-996, gnl|rheMac2|chr19 (16842220-16842405)
               

               
               761-996, gnl|rn3|chr16 (18568826-18569011)
               

               
               761-996, gnl|tetNig1|chr1 (13941368-13941534)

	401-633, gnl\|bosTau2\|chr7 (2803777-2803545)
	401-633, gnl\|Hg17\|chr19 (17257167-17257400)

	761-996, gnl\|bosTau2\|chr7 (2803056-2802820)
	761-996, gnl\|canFam2\|chr20 (48465674-48465489)
	761-996, gnl\|danRer3\|chrNA (4584006-4584168)
	761-996, gnl\|echTel1\|scaffold_104934 (2594-2779)
	761-996, gnl\|fr1\|chrUn (169272601-169272768)
	761-996, gnl\|hg17\|chr19 (17258180-17258365)
	761-996, gnl\|Hg17\|chr19 (17258187-17258417)
	761-996, gnl\|loxAfr1\|scaffold_30283 (8647-8836)
	761-996, gnl\|mm7\|chr8 (69876113-69876298)
	761-996, gnl\|Mm7\|chr8 (69876120-69876351)
	761-996, gnl\|monDom2\|scaffold_100 (4339619-4339803)
	761-996, gnl\|panTro1\|chr20 (17954398-17954583)
	761-996, gnl\|rheMac2\|chr19 (16842220-16842405)
	761-996, gnl\|rn3\|chr16 (18568826-18569011)
	761-996, gnl\|tetNig1\|chr1 (13941368-13941534)