Non-Coding RNA Search

Ss1.1-Thy1-THY010044B08.5

Sequence:


               
               GTTCACCAAGATTCTGTTTCTCATAGTGTTTGCATGGTTTGCAGTTCTTTGAAGGGGTGA
CTTTGCTGGAAAAGATAGGACTAGTGTGACTGAGAGATTTATCTAGAACTATCTCATAAA
GCTTTCTCTGACCTCCATTGTGCCCTAGGAAAACTTGGCCAATCTGTCCTCTGTGCTCCC
TCTCTCCCTCCCACTCACGTGGTTGCTTTCCCTCTCCAATTGTTTGTCTCTTTAATTATA
TATCCATGTTGAGGACTGGGCCTTAATAGACCTTTGTAAATGAACAGTGGATATGGAAGC
TAGGAGCTCAGATGGAAATTCAGGTTGGGAAGGATGGGGCAAATTTAGTTGCAAGCAAAT
GGCAAGTCTCTTGATGAGTACTGGTCAGCAGGCCTGGCTTGTGGAATCCTGGGTTGAGTT
TGTCCACTTTTGTGACCTAGCAGAAATGGCTTTCACTATAGGACCCAGCCTTCTTGGCCT
GTTGCCTAGCAATGTGTTAGTCTCTTAAAATGTCAGTGGGCTGGTAGTTAAGGTGAATAT
GTCCACTTGGACACCACTGGTCGGTGCTCAGTTACCGACTCTAGGAGTGGAAACACTGGC
AACCTGGTTTCTTCACGACATATAGACTCATGGTCCACACACACACACACACACACACAT
ACACACACACACATCACTACTGATTTGGCTTGAGAGTGTATCGTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCACCAAGATTCTGTTTCTCATAGTGTTTGCATGGTTTGCAGTTCTTTGAAGGGGTGA
CTTTGCTGGAAAAGATAGGACTAGTGTGACTGAGAGATTTATCTAGAACTATCTCATAAA
GCTTTCTCTGACCTCCATTGTGCCCTAGGAAAACTTGGCCAATCTGTCCTCTGTGCTCCC
TCTCTCCCTCCCACTCACGTGGTTGCTTTCCCTCTCCAATTGTTTGTCTCTTTAATTATA
TATCCATGTTGAGGACTGGGCCTTAATAGACCTTTGTAAATGAACAGTGGATATGGAAGC
TAGGAGCTCAGATGGAAATTCAGGTTGGGAAGGATGGGGCAAATTTAGTTGCAAGCAAAT
GGCAAGTCTCTTGATGAGTACTGGTCAGCAGGCCTGGCTTGTGGAATCCTGGGTTGAGTT
TGTCCACTTTTGTGACCTAGCAGAAATGGCTTTCACTATAGGACCCAGCCTTCTTGGCCT
GTTGCCTAGCAATGTGTTAGTCTCTTAAAATGTCAGTGGGCTGGTAGTTAAGGTGAATAT
GTCCACTTGGACACCACTGGTCGGTGCTCAGTTACCGACTCTAGGAGTGGAAACACTGGC
AACCTGGTTTCTTCACGACATATAGACTCATGGTCCACACACACACACACACACACACAT
ACACACACACACATCACTACTGATTTGGCTTGAGAGTGTATCGTGCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               325-435, + strand, RNAz p=0.556464

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               325-435, + strand, RNAz p=0.556464

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               4-263, gnl|bosTau2|chr24 (32744121-32743855)
               

               
               4-263, gnl|canFam2|chr7 (49303350-49302946)
               

               
               4-263, gnl|dasNov1|scaffold_191 (180456-180052)
               

               
               4-263, gnl|echTel1|scaffold_292543 (33530-33065)
               

               
               4-263, gnl|hg17|chr18 (40570538-40570895)
               

               
               4-263, gnl|Hg17|chr18 (40570747-40570975)
               

               
               4-263, gnl|monDom2|scaffold_58 (2462781-2463094)
               

               
               4-263, gnl|panTro1|chr17 (36889643-36890000)
               

               
               4-263, gnl|rheMac2|chr18 (37799668-37800022)
               


               
               286-708, gnl|bosTau2|chr24 (32743679-32743246)
               

               
               286-708, gnl|Hg17|chr18 (40571032-40571439)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-263, gnl|bosTau2|chr24 (32744121-32743855)
               

               
               4-263, gnl|canFam2|chr7 (49303350-49302946)
               

               
               4-263, gnl|dasNov1|scaffold_191 (180456-180052)
               

               
               4-263, gnl|echTel1|scaffold_292543 (33530-33065)
               

               
               4-263, gnl|hg17|chr18 (40570538-40570895)
               

               
               4-263, gnl|Hg17|chr18 (40570747-40570975)
               

               
               4-263, gnl|monDom2|scaffold_58 (2462781-2463094)
               

               
               4-263, gnl|panTro1|chr17 (36889643-36890000)
               

               
               4-263, gnl|rheMac2|chr18 (37799668-37800022)
               


               
               286-708, gnl|bosTau2|chr24 (32743679-32743246)
               

               
               286-708, gnl|Hg17|chr18 (40571032-40571439)

	4-263, gnl\|bosTau2\|chr24 (32744121-32743855)
	4-263, gnl\|canFam2\|chr7 (49303350-49302946)
	4-263, gnl\|dasNov1\|scaffold_191 (180456-180052)
	4-263, gnl\|echTel1\|scaffold_292543 (33530-33065)
	4-263, gnl\|hg17\|chr18 (40570538-40570895)
	4-263, gnl\|Hg17\|chr18 (40570747-40570975)
	4-263, gnl\|monDom2\|scaffold_58 (2462781-2463094)
	4-263, gnl\|panTro1\|chr17 (36889643-36890000)
	4-263, gnl\|rheMac2\|chr18 (37799668-37800022)

	286-708, gnl\|bosTau2\|chr24 (32743679-32743246)
	286-708, gnl\|Hg17\|chr18 (40571032-40571439)