Non-Coding RNA Search

Ss1.1-Thy1-THY010045D11.5

Sequence:


               
               TAGATATAGAAGCAAAGACAAAAAATAAATCTCAACTAAAATTAAGAGGAAATATGGTTT
CATACTGAGTTCTACAGAATCTGTGATATAAACCTGTGGATCCTAGAATAATTATACCAT
ACCATTATAGGTGTCTAAATGTCTCAGTTAAGGAAAATTTGCAGCCTCGTTCAGATCCCC
CACCCTGAATTGTCTTTGAATAATGAACCTTGGATCTGTCTCCTTACATTCTGGCATCTT
TCTCCGTGATATAATTGTTGCTTCATACACGTGGCAATTGGAGTAAGTAATTGTTATTTA
GAAATACACAGTAATACATTTATGATATTATATAGTTGGGTTGAAAAAGGTCTAAACTGA
AAGAGCTAACCAATGTTAGTGACTTTTTTTTCAAGCTTTCTGGTAAATAGCTTTTTATTA
CCATGTACACTGATATACTTTGTCCTAGGCTCGGATGCTCATCACGGAAGAAAATCTAAT
GACCATTATCATTAAGACATTTATGGATCATTTGAGACATCGAGATGCCCAGGGCAGATT
TCAGTTTGAACGATACACTGCTTTACAAGCCTTCAAGTTCAGGAGAGTTCAGAGCCTTAT
TTTAGATCTCAAGTATGTGTTAATTAGCAAACCAACTGAATGGTCAGATGATCTGAGGCA
GAAGTTCCTAGAAGGATTTGATGCCTTTTTGGAATTACTCAAATGTATGCAGGGAATGGA
TCCAGTTACACGTCAGGTAGGACAGCATATTGAAATGGAACCTGAGTGGGAAGCAGCCTT
CACACTACAGATGAAATTAACACATGTCATTTCAATGATGCAAGACTGGTGTGCTTTAGA
TGAAAAAAGTGTTAATTGAAGCTTACAAGAAATGCCTTGCTGTATTGACGCAGTGTCATG
GTGGTTTTACCGATGGCGAACAACCAGTCACATTAAGCATTTGTGGACATTCAGTGGAAA
CTATCAGATACTGTGTTTCCAAAGAAAAAGTTAGCATTCACCTCCCAGTTTCTCGCTTAC
TTGCAGGTTTACATGTCTTATTAAGCAAAAGTGAAGTGGCGTATAAATTTCCAGAGCTCC
TACCTCTAAGTGAACTTAGCCCACCCATGTTGATAGAACACCCTCTTAGATGTCTTGTTT
TGTGTGCCCAAGTACATGCAGGAATGTGGAGAAGAAATGGGTTCTCTCTAGTAAACCAGA
TTTATTACTACCACAATGTGAAATGCAGACGTGAAATGTTTGACAAGGATATTGTAATGC
TTCAGGTAATGAATTAAGAGCATTAAATTTAAAGGTTATGGGGAGTTTTTCTTCTTGTAA
CTTCCACGGGACCCAGTTGCTTAGATCACTGTCAGATCTACAATGCTGGCCCAGCCCTCT
CTACTAAGCATCAGACTCCTATGGCGAAGAGCCTATAGAACATTTCCATCTAGGTTCCTA
GGCACATCTCAGATTTAGCATATTCAAAATAACTCCACTTATGTCCTCCGTACCTTCTTC
CTATCTTTGGAGGTTCCTTCCCTTAGTGAATTGTTCAACAGTCTATGCAGTTATTAGAAG
CAGAAACTTGAAAGCCATCCTTTCTTTCTTTTCCTCTGATTAAAGACTCAAATCCCTCAA
ACTGGTTTTCAAGGCCTTCAGTACTTAACTATGTTAAAATTCCCTGAATTGGAGAGTTCC
CGTTATGGCTCAGCAGGCTACAAACCTGGCTAGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGATATAGAAGCAAAGACAAAAAATAAATCTCAACTAAAATTAAGAGGAAATATGGTTT
CATACTGAGTTCTACAGAATCTGTGATATAAACCTGTGGATCCTAGAATAATTATACCAT
ACCATTATAGGTGTCTAAATGTCTCAGTTAAGGAAAATTTGCAGCCTCGTTCAGATCCCC
CACCCTGAATTGTCTTTGAATAATGAACCTTGGATCTGTCTCCTTACATTCTGGCATCTT
TCTCCGTGATATAATTGTTGCTTCATACACGTGGCAATTGGAGTAAGTAATTGTTATTTA
GAAATACACAGTAATACATTTATGATATTATATAGTTGGGTTGAAAAAGGTCTAAACTGA
AAGAGCTAACCAATGTTAGTGACTTTTTTTTCAAGCTTTCTGGTAAATAGCTTTTTATTA
CCATGTACACTGATATACTTTGTCCTAGGCTCGGATGCTCATCACGGAAGAAAATCTAAT
GACCATTATCATTAAGACATTTATGGATCATTTGAGACATCGAGATGCCCAGGGCAGATT
TCAGTTTGAACGATACACTGCTTTACAAGCCTTCAAGTTCAGGAGAGTTCAGAGCCTTAT
TTTAGATCTCAAGTATGTGTTAATTAGCAAACCAACTGAATGGTCAGATGATCTGAGGCA
GAAGTTCCTAGAAGGATTTGATGCCTTTTTGGAATTACTCAAATGTATGCAGGGAATGGA
TCCAGTTACACGTCAGGTAGGACAGCATATTGAAATGGAACCTGAGTGGGAAGCAGCCTT
CACACTACAGATGAAATTAACACATGTCATTTCAATGATGCAAGACTGGTGTGCTTTAGA
TGAAAAAAGTGTTAATTGAAGCTTACAAGAAATGCCTTGCTGTATTGACGCAGTGTCATG
GTGGTTTTACCGATGGCGAACAACCAGTCACATTAAGCATTTGTGGACATTCAGTGGAAA
CTATCAGATACTGTGTTTCCAAAGAAAAAGTTAGCATTCACCTCCCAGTTTCTCGCTTAC
TTGCAGGTTTACATGTCTTATTAAGCAAAAGTGAAGTGGCGTATAAATTTCCAGAGCTCC
TACCTCTAAGTGAACTTAGCCCACCCATGTTGATAGAACACCCTCTTAGATGTCTTGTTT
TGTGTGCCCAAGTACATGCAGGAATGTGGAGAAGAAATGGGTTCTCTCTAGTAAACCAGA
TTTATTACTACCACAATGTGAAATGCAGACGTGAAATGTTTGACAAGGATATTGTAATGC
TTCAGGTAATGAATTAAGAGCATTAAATTTAAAGGTTATGGGGAGTTTTTCTTCTTGTAA
CTTCCACGGGACCCAGTTGCTTAGATCACTGTCAGATCTACAATGCTGGCCCAGCCCTCT
CTACTAAGCATCAGACTCCTATGGCGAAGAGCCTATAGAACATTTCCATCTAGGTTCCTA
GGCACATCTCAGATTTAGCATATTCAAAATAACTCCACTTATGTCCTCCGTACCTTCTTC
CTATCTTTGGAGGTTCCTTCCCTTAGTGAATTGTTCAACAGTCTATGCAGTTATTAGAAG
CAGAAACTTGAAAGCCATCCTTTCTTTCTTTTCCTCTGATTAAAGACTCAAATCCCTCAA
ACTGGTTTTCAAGGCCTTCAGTACTTAACTATGTTAAAATTCCCTGAATTGGAGAGTTCC
CGTTATGGCTCAGCAGGCTACAAACCTGGCTAGTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61858804|ref|XP_609425.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61858804|ref|XP_609425.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               875-994, - strand, RNAz p=0.996274

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               875-994, - strand, RNAz p=0.996274

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-621, gnl|bosTau2|chr23 (16995384-16996020)
               

               
               1-621, gnl|Hg17|chr6 (42707805-42708440)
               


               
               835-1028, gnl|bosTau2|chr23 (17001095-17001287)
               

               
               835-1028, gnl|Hg17|chr6 (42712720-42712912)
               

               
               835-1028, gnl|Mm7|chr17 (45103974-45103782)
               


               
               1197-1359, gnl|bosTau2|chr23 (17005223-17005386)
               

               
               1197-1359, gnl|Hg17|chr6 (42718129-42718293)
               

               
               1197-1359, gnl|Mm7|chr17 (45099371-45099215)
               


               
               1370-1690, gnl|bosTau2|chr23 (17005619-17005938)
               

               
               1370-1690, gnl|Hg17|chr6 (42718309-42718649)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-621, gnl|bosTau2|chr23 (16995384-16996020)
               

               
               1-621, gnl|Hg17|chr6 (42707805-42708440)
               


               
               835-1028, gnl|bosTau2|chr23 (17001095-17001287)
               

               
               835-1028, gnl|Hg17|chr6 (42712720-42712912)
               

               
               835-1028, gnl|Mm7|chr17 (45103974-45103782)
               


               
               1197-1359, gnl|bosTau2|chr23 (17005223-17005386)
               

               
               1197-1359, gnl|Hg17|chr6 (42718129-42718293)
               

               
               1197-1359, gnl|Mm7|chr17 (45099371-45099215)
               


               
               1370-1690, gnl|bosTau2|chr23 (17005619-17005938)
               

               
               1370-1690, gnl|Hg17|chr6 (42718309-42718649)

	1-621, gnl\|bosTau2\|chr23 (16995384-16996020)
	1-621, gnl\|Hg17\|chr6 (42707805-42708440)

	835-1028, gnl\|bosTau2\|chr23 (17001095-17001287)
	835-1028, gnl\|Hg17\|chr6 (42712720-42712912)
	835-1028, gnl\|Mm7\|chr17 (45103974-45103782)

	1197-1359, gnl\|bosTau2\|chr23 (17005223-17005386)
	1197-1359, gnl\|Hg17\|chr6 (42718129-42718293)
	1197-1359, gnl\|Mm7\|chr17 (45099371-45099215)

	1370-1690, gnl\|bosTau2\|chr23 (17005619-17005938)
	1370-1690, gnl\|Hg17\|chr6 (42718309-42718649)