Non-Coding RNA Search

Ss1.1-Thy1-THY010048A06.5

Sequence:


               
               CATTATTATAACAACTCTCCCTATTTTTGTTCCATTTTGAAACCGACAATCTAAAGACTA
TTTTTAGCTCAGTCATGTGAGATTATTTGTTTCCTTATGATGAGAAGTTTTTCCTTCGGA
CTAGTTAACATGAATTTTATGCTCACTTATTATGTCACATGCGCCAATTCAATTTATTTT
AAAGCCGATTCTTTGGGGAAAACTGTAAAGCTAATTTGAATTGATTCTTTAGAGATTCCA
TTTTAAATGAAGTGCTATAAAATTGGCAGACAAAGTGAAAAAATGGAACTGAATTTTCTT
CTGCAGCTACTCATTGGATTCAGAAATCTTGCTTTTCGACAGTGCCAAGGGTTTTGATAT
AATGTTTTACACAATTTTCCTAACATTTATCTCAAAACTCCACTGCCTTTATTTTGGTGG
CTCGACTCAAAATGGTTTCCTGATACTTCCAGAGATAAAAGCAAAGTTCTTGCTAAAAGA
AACATTTGGTGCTTTGCTGCAGACGTCTTAGCATCTACAGTGTGTCCGTCTAGAACACAT
CTGCTGTGAAGCAGGTATTTTAATGCCAGAGTGAATACTGAGCATTTGTGGACAAACTTT
CTGAGAGGTGGTGTGGCAAATAAAACTGCATCTCCAACTTCCTCCTCTTTGGCCTCCATT
TATGCTTCTCCCTTTCATAGTTGATGGATTTACAGCTTGAGGATAGCATGGAAATAATAG
GCAAGGTGCCTGATGGCTTAATTTCCTGTCCTCCACGGACCCGAGAGGAGCCCATTGTTC
GTCAGGGCAGCGGGGCCCCAAGCTAATCAGAAGCAGCCAGCACCAGGTGGGGAAAGGAGC
CCCGGGATTGGATCATCTGATTGCACTGGATGATTTATATCCGATTATTAACGATCTAAT
GGTAAATACATAGAAAACACATGTCGGCAATTTCACCTTGAGACACACTTGTTTTCTTTG
ACGTTTTTAAAAGGGAGTTGTATTGCATGCTCATCTTTTGCCCTGAATTCCCTAAACAGC
AACCATCATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTATTATAACAACTCTCCCTATTTTTGTTCCATTTTGAAACCGACAATCTAAAGACTA
TTTTTAGCTCAGTCATGTGAGATTATTTGTTTCCTTATGATGAGAAGTTTTTCCTTCGGA
CTAGTTAACATGAATTTTATGCTCACTTATTATGTCACATGCGCCAATTCAATTTATTTT
AAAGCCGATTCTTTGGGGAAAACTGTAAAGCTAATTTGAATTGATTCTTTAGAGATTCCA
TTTTAAATGAAGTGCTATAAAATTGGCAGACAAAGTGAAAAAATGGAACTGAATTTTCTT
CTGCAGCTACTCATTGGATTCAGAAATCTTGCTTTTCGACAGTGCCAAGGGTTTTGATAT
AATGTTTTACACAATTTTCCTAACATTTATCTCAAAACTCCACTGCCTTTATTTTGGTGG
CTCGACTCAAAATGGTTTCCTGATACTTCCAGAGATAAAAGCAAAGTTCTTGCTAAAAGA
AACATTTGGTGCTTTGCTGCAGACGTCTTAGCATCTACAGTGTGTCCGTCTAGAACACAT
CTGCTGTGAAGCAGGTATTTTAATGCCAGAGTGAATACTGAGCATTTGTGGACAAACTTT
CTGAGAGGTGGTGTGGCAAATAAAACTGCATCTCCAACTTCCTCCTCTTTGGCCTCCATT
TATGCTTCTCCCTTTCATAGTTGATGGATTTACAGCTTGAGGATAGCATGGAAATAATAG
GCAAGGTGCCTGATGGCTTAATTTCCTGTCCTCCACGGACCCGAGAGGAGCCCATTGTTC
GTCAGGGCAGCGGGGCCCCAAGCTAATCAGAAGCAGCCAGCACCAGGTGGGGAAAGGAGC
CCCGGGATTGGATCATCTGATTGCACTGGATGATTTATATCCGATTATTAACGATCTAAT
GGTAAATACATAGAAAACACATGTCGGCAATTTCACCTTGAGACACACTTGTTTTCTTTG
ACGTTTTTAAAAGGGAGTTGTATTGCATGCTCATCTTTTGCCCTGAATTCCCTAAACAGC
AACCATCATTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               159-276, + strand, RNAz p=0.805267

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-276, + strand, RNAz p=0.805267

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1032, gnl|bosTau2|chr10 (69871541-69870520)
               

               
               1-1032, gnl|Hg17|chr14 (89312257-89311223)
               

               
               1-1032, gnl|Mm7|chr12 (97195389-97194390)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1032, gnl|bosTau2|chr10 (69871541-69870520)
               

               
               1-1032, gnl|Hg17|chr14 (89312257-89311223)
               

               
               1-1032, gnl|Mm7|chr12 (97195389-97194390)

	1-1032, gnl\|bosTau2\|chr10 (69871541-69870520)
	1-1032, gnl\|Hg17\|chr14 (89312257-89311223)
	1-1032, gnl\|Mm7\|chr12 (97195389-97194390)