Non-Coding RNA Search

Ss1.1-Thy1-THY010048D10.5

Sequence:


               
               TTATTTATTTATTTATAGAGAGGATTTTTTTTCCCCTTTAGAAAAGGTCCCTTGGTGGCA
GAGGAGGGGGGAATTCATTATTTTTGTCAGAAAGGACTTTTTGAACTAATTTGGCATTCT
CTTTGCTAGTGAGGAATGCAGTAACATTATTTTATATTTCTGCTTCAACACCTGGCCAAA
AGATGCGACTGTAGATCAATAAACTGCAGTGTCCCCAGGATGTGGGTATTTAAGATTCTT
GGCTTTTGGTTTGCATTTTTAAAGTAGCAGAGCTATTGCTTATTTCTTGTTGGAAACGGG
TGTTATTTAATCTTCTTATTTATAGATACATTATTTCAGAAGCTTACGTTTTATTCCTCC
TGGGGGAAAAGAAAGTGTTCTTAAATTTTAGGCTCCCTTATTGTGGAGTTAAATTGTACT
GGTGGTGATTTATTCAGTGAAACCAGAAATAACTTGTTTTTATTTTTAGATTACTAGTAT
AACCAGCAACCATAGAAACTGTGTTTGCTAAAAAAAAAGGATTTCTTATTGAAATCAGCC
TAAAATGCTTGCCTTGTATCTAAATGAAGAACAGTTGTTCACCTTTTAAACATGAATACA
GTAAAAAAATGGTTTTCCTTCTTTTAACATTGGGAAACGATTGATGATTTGCACTTGAAG
ACTGTAGGGAAATAGTGTATTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTTATTTATTTATAGAGAGGATTTTTTTTCCCCTTTAGAAAAGGTCCCTTGGTGGCA
GAGGAGGGGGGAATTCATTATTTTTGTCAGAAAGGACTTTTTGAACTAATTTGGCATTCT
CTTTGCTAGTGAGGAATGCAGTAACATTATTTTATATTTCTGCTTCAACACCTGGCCAAA
AGATGCGACTGTAGATCAATAAACTGCAGTGTCCCCAGGATGTGGGTATTTAAGATTCTT
GGCTTTTGGTTTGCATTTTTAAAGTAGCAGAGCTATTGCTTATTTCTTGTTGGAAACGGG
TGTTATTTAATCTTCTTATTTATAGATACATTATTTCAGAAGCTTACGTTTTATTCCTCC
TGGGGGAAAAGAAAGTGTTCTTAAATTTTAGGCTCCCTTATTGTGGAGTTAAATTGTACT
GGTGGTGATTTATTCAGTGAAACCAGAAATAACTTGTTTTTATTTTTAGATTACTAGTAT
AACCAGCAACCATAGAAACTGTGTTTGCTAAAAAAAAAGGATTTCTTATTGAAATCAGCC
TAAAATGCTTGCCTTGTATCTAAATGAAGAACAGTTGTTCACCTTTTAAACATGAATACA
GTAAAAAAATGGTTTTCCTTCTTTTAACATTGGGAAACGATTGATGATTTGCACTTGAAG
ACTGTAGGGAAATAGTGTATTAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               71-190, + strand, RNAz p=0.827298

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-190, + strand, RNAz p=0.827298

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr10 (5368213-5367519)
               

               
               1-684, gnl|Hg17|chr15 (64374548-64375225)
               

               
               1-684, gnl|Mm7|chr9 (64369105-64368444)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr10 (5368213-5367519)
               

               
               1-684, gnl|Hg17|chr15 (64374548-64375225)
               

               
               1-684, gnl|Mm7|chr9 (64369105-64368444)

	1-684, gnl\|bosTau2\|chr10 (5368213-5367519)
	1-684, gnl\|Hg17\|chr15 (64374548-64375225)
	1-684, gnl\|Mm7\|chr9 (64369105-64368444)