Non-Coding RNA Search

Ss1.1-Thy1-THY010052H07.5

Sequence:


               
               TTTTTGTTCAGGAGTTAAATGGTGTACACACATGCAGACACACACACACACACACACATA
TATATATATTTTTTTTTAAGTGTTTCTGTTTGGGTTTGAAAAAAGATGGAGTTGGCCATT
TGGCATGTTCAGCAGCCATCTCGACCACATCTCAAGATGTATGAGGAACATTTTCCGGGC
AGTTACTCCAATCACTTCAAAGCGGAGGTCCTGCCTTTGTCTTCTGGCTTCTGATCATGC
AAGAGGATGCTTTCTGGGTCTGCAGCCTTCCGTCCTTGGCTCTCTGGGAGCCCTATCTCC
CCAGCTCGGGAAGGGCAGGAACTGACCCCACAACGAAGTGCGAGGTGGTACTGGAGTTTG
GAGTGAAGCTGGGCTGCCGAGTCCTCAGAGAGGAGCTCCTAGGGCCCAGGCTCAGCTCAG
CTCCCAGAGGCTCAGCTCCCAGGGCCTCAGAGTGAACAAGGGCCCGGGTTTGGAATTTGT
CAGTGTTTGCTGCCGCATACCTTTTGCCAAGCAAGAGCATACACCTACCGGCCACCTGGT
CGCGTGGCATGGCATTTCTCCCGACCTCGGGCGTGCAGAGGGTAAAGCATACTGCATTCG
TTTCTTCCTGAAAATAATGGGCCAAATTACAACCCCCATGGCTGAGAATTAGGACCCCTA
CCAAGTCAGTATGAAGGAAATTATGACTGAAACAAAAGACAAATGTTCTGCCCTTTTTGA
AGCGTCTGAGAATTTTCCATGGTGTGGCAGTGCTGCCAGGGTTGGTAGTGATAATTATTC
CTTAGACACAGACACACTCTCTTTCTGGAAGGAACAGTGTTTTCATTATACACTTCAAAG
TGTTTTCCTGCACCTCATCTCCTTAGAGCCTCGGAACAAACCTGTGAGGAAGGTGGGGCG
GGTGTGATCATTTTCCTTTGGAGAAAAAGGAAATAGGTTCACAGAGGCAAAATAATTTGC
TCCCAGCCGCAGAGGTGGGGAGGAAACTTGTGTTGCCGCCTGCCATTCTGGAGAATCTCA
GAAAGACCCTTTAAGAGCCCAGAAATGAGACCCAAAATAATTCCTCCGGGAGTTTGGCTC
TTGCTAACTAAAAGAGGGCGAACTTTGCACGTGATTTTTCCTTTGCCTCCCTCTTAGCAT
TTTATTTAGGCATCGCAAAGGGCAAAGAGAATGGCTTCCTTCCTTTTCCTTTCCTGCCAA
AGAATACAACACCCGCATTTAGCAGTTAAAAAGGACGCCGAAAATGAACATGGCATCGTT
TCTGTGCCTCATAAGTCAGAGCAGAGCTGTGTTTGAACTGGGCCGTAGCACCACTTTGCT
GGGTCTTGCCTAGATCAAAATACTCCTTGAAGCTGAGAGTGCGCCCATGCTGTAGCTTGA
GGAATTGTTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTGTTCAGGAGTTAAATGGTGTACACACATGCAGACACACACACACACACACACATA
TATATATATTTTTTTTTAAGTGTTTCTGTTTGGGTTTGAAAAAAGATGGAGTTGGCCATT
TGGCATGTTCAGCAGCCATCTCGACCACATCTCAAGATGTATGAGGAACATTTTCCGGGC
AGTTACTCCAATCACTTCAAAGCGGAGGTCCTGCCTTTGTCTTCTGGCTTCTGATCATGC
AAGAGGATGCTTTCTGGGTCTGCAGCCTTCCGTCCTTGGCTCTCTGGGAGCCCTATCTCC
CCAGCTCGGGAAGGGCAGGAACTGACCCCACAACGAAGTGCGAGGTGGTACTGGAGTTTG
GAGTGAAGCTGGGCTGCCGAGTCCTCAGAGAGGAGCTCCTAGGGCCCAGGCTCAGCTCAG
CTCCCAGAGGCTCAGCTCCCAGGGCCTCAGAGTGAACAAGGGCCCGGGTTTGGAATTTGT
CAGTGTTTGCTGCCGCATACCTTTTGCCAAGCAAGAGCATACACCTACCGGCCACCTGGT
CGCGTGGCATGGCATTTCTCCCGACCTCGGGCGTGCAGAGGGTAAAGCATACTGCATTCG
TTTCTTCCTGAAAATAATGGGCCAAATTACAACCCCCATGGCTGAGAATTAGGACCCCTA
CCAAGTCAGTATGAAGGAAATTATGACTGAAACAAAAGACAAATGTTCTGCCCTTTTTGA
AGCGTCTGAGAATTTTCCATGGTGTGGCAGTGCTGCCAGGGTTGGTAGTGATAATTATTC
CTTAGACACAGACACACTCTCTTTCTGGAAGGAACAGTGTTTTCATTATACACTTCAAAG
TGTTTTCCTGCACCTCATCTCCTTAGAGCCTCGGAACAAACCTGTGAGGAAGGTGGGGCG
GGTGTGATCATTTTCCTTTGGAGAAAAAGGAAATAGGTTCACAGAGGCAAAATAATTTGC
TCCCAGCCGCAGAGGTGGGGAGGAAACTTGTGTTGCCGCCTGCCATTCTGGAGAATCTCA
GAAAGACCCTTTAAGAGCCCAGAAATGAGACCCAAAATAATTCCTCCGGGAGTTTGGCTC
TTGCTAACTAAAAGAGGGCGAACTTTGCACGTGATTTTTCCTTTGCCTCCCTCTTAGCAT
TTTATTTAGGCATCGCAAAGGGCAAAGAGAATGGCTTCCTTCCTTTTCCTTTCCTGCCAA
AGAATACAACACCCGCATTTAGCAGTTAAAAAGGACGCCGAAAATGAACATGGCATCGTT
TCTGTGCCTCATAAGTCAGAGCAGAGCTGTGTTTGAACTGGGCCGTAGCACCACTTTGCT
GGGTCTTGCCTAGATCAAAATACTCCTTGAAGCTGAGAGTGCGCCCATGCTGTAGCTTGA
GGAATTGTTCCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               817-961, - strand, RNAz p=0.994997
               

               
               1238-1357, - strand, RNAz p=0.942954

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               817-961, - strand, RNAz p=0.994997
               

               
               1238-1357, - strand, RNAz p=0.942954

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               923-1016, + strand, RNAmicro p=0.993794

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               923-1016, + strand, RNAmicro p=0.993794

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               60-1392, gnl|bosTau2|chr13 (48731941-48733234)
               

               
               60-1392, gnl|Hg17|chr20 (36049284-36047987)
               

               
               60-1392, gnl|Mm7|chr2 (157727074-157725903)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-1392, gnl|bosTau2|chr13 (48731941-48733234)
               

               
               60-1392, gnl|Hg17|chr20 (36049284-36047987)
               

               
               60-1392, gnl|Mm7|chr2 (157727074-157725903)

	817-961, - strand, RNAz p=0.994997
	1238-1357, - strand, RNAz p=0.942954

	60-1392, gnl\|bosTau2\|chr13 (48731941-48733234)
	60-1392, gnl\|Hg17\|chr20 (36049284-36047987)
	60-1392, gnl\|Mm7\|chr2 (157727074-157725903)