Ss1.1-Thy1-THY010057A11.5
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ACTGCAGTGTAGCGCCCTGCGGTTCCGGGTGTGACGCTCTGGCCAGCGGTGTCTGGCCCG
GAGAGAGGAACAGCCGACTGAGAAGAGGAGGCTGAGAGGGGAGAGAGAATTCTGACGCCA
TCATGCAGCGAAGTATCATGTCATTTTTCCAGCCCAAGGAAGAGGGCAAAGCAAAGAAGC
CAGAGAAGGAGACATCCAACAGTACCAGAGAAATAGAGTCCCCTCCAAAGGTGGCACTGA
AGGAGCGGAATAGAGTGGTGCCCGAGGGCGACTCTCCAGTAAGGAGGCCTGGGAGGAAGG
TGGCCCGGGTGCTGGGCAGCGAAGGGGAGGATGAGGAGGACGCCTCCACGCCCCCCAAAC
GCCAGAAACTTGCTCCAGACTCTCCACAAGTCTCCCATCCCGGTCCTGTCTCTTTTCCTG
AGAGCAGCCCTTCCCTCTCCAGCTCCTCTCCGGAGGTCATCTCCCCATCAGGGATCCCGA
AGCGTCGCACAGCCCGGAAGCAGCTGTCCAAACGGACATTTCAGGATGTCCTGGAAGAGC
AGAGCGAGGACAAGGACAGAGAAGCTAAGAGGCCGAAGACGGAAGAAGAAGCCGAGACAC
CAACAGAAAGCCTCACAGAGCCTGAAGTGAGCAAAAAGCAGGAAGCAGAAGAAGGGGACC
AGCCCACAACGCCCCCTGAGCCCCCAAAGACTGCCACAGAGTCCCCGGCGGTAGCGGTGG
TGGCAGCAAGCATCTCGGGGCCCGAGGTGGCGGCGAAGCAGGCAGTGCAGGAGGATGGCC
AGGCGAAGCCTCCCCCCAGAACTCTCAAGACGCTCAGCAGTTTCTTCTCCCCCCGGAAGC
CGGCAGCAAAAAAAGAAGTGAACGAAGAGGGACCCAGCGCCCTACGAAAGGACGAGGCCA
CGGGACACCCGGACCCTCCCAGCTACAATCCTGCCAAGAACAACTACCATCCCGTCCAGG
ATGCCTGCTGGCAGGCGGGCCAGAGGGTCCCCTACCTGGCCGTGGCCCGGACCTTTGAGA
AGATTGAGGAGGTTTCTGCACGGCTCCGCATGGTCGAGACGCTGAGCAACCTGCTGCGCT
CCGTGGTGGCCCTGTCACCTGCGGACCTCCTCCCCGTCCTCTACCTCAGCCTCAACCGCC
TGGGGCCGCCCCAGCAGGGCCTGGAGCTCGGCATCGGCGACGGCATCCTTCTCAAGGCAG |
Blue-coloured subsequences are predicted RNA structures by RNAz
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ACTGCAGTGTAGCGCCCTGCGGTTCCGGGTGTGACGCTCTGGCCAGCGGTGTCTGGCCCG
GAGAGAGGAACAGCCGACTGAGAAGAGGAGGCTGAGAGGGGAGAGAGAATTCTGACGCCA
TCATGCAGCGAAGTATCATGTCATTTTTCCAGCCCAAGGAAGAGGGCAAAGCAAAGAAGC
CAGAGAAGGAGACATCCAACAGTACCAGAGAAATAGAGTCCCCTCCAAAGGTGGCACTGA
AGGAGCGGAATAGAGTGGTGCCCGAGGGCGACTCTCCAGTAAGGAGGCCTGGGAGGAAGG
TGGCCCGGGTGCTGGGCAGCGAAGGGGAGGATGAGGAGGACGCCTCCACGCCCCCCAAAC
GCCAGAAACTTGCTCCAGACTCTCCACAAGTCTCCCATCCCGGTCCTGTCTCTTTTCCTG
AGAGCAGCCCTTCCCTCTCCAGCTCCTCTCCGGAGGTCATCTCCCCATCAGGGATCCCGA
AGCGTCGCACAGCCCGGAAGCAGCTGTCCAAACGGACATTTCAGGATGTCCTGGAAGAGC
AGAGCGAGGACAAGGACAGAGAAGCTAAGAGGCCGAAGACGGAAGAAGAAGCCGAGACAC
CAACAGAAAGCCTCACAGAGCCTGAAGTGAGCAAAAAGCAGGAAGCAGAAGAAGGGGACC
AGCCCACAACGCCCCCTGAGCCCCCAAAGACTGCCACAGAGTCCCCGGCGGTAGCGGTGG
TGGCAGCAAGCATCTCGGGGCCCGAGGTGGCGGCGAAGCAGGCAGTGCAGGAGGATGGCC
AGGCGAAGCCTCCCCCCAGAACTCTCAAGACGCTCAGCAGTTTCTTCTCCCCCCGGAAGC
CGGCAGCAAAAAAAGAAGTGAACGAAGAGGGACCCAGCGCCCTACGAAAGGACGAGGCCA
CGGGACACCCGGACCCTCCCAGCTACAATCCTGCCAAGAACAACTACCATCCCGTCCAGG
ATGCCTGCTGGCAGGCGGGCCAGAGGGTCCCCTACCTGGCCGTGGCCCGGACCTTTGAGA
AGATTGAGGAGGTTTCTGCACGGCTCCGCATGGTCGAGACGCTGAGCAACCTGCTGCGCT
CCGTGGTGGCCCTGTCACCTGCGGACCTCCTCCCCGTCCTCTACCTCAGCCTCAACCGCC
TGGGGCCGCCCCAGCAGGGCCTGGAGCTCGGCATCGGCGACGGCATCCTTCTCAAGGCAG |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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219-365, gnl|bosTau2|chr18 (47887306-47887455) |
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219-365, gnl|Hg17|chr19 (53356587-53356441) |
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219-365, gnl|Mm7|chr7 (11872201-11872350) |
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1042-1200, gnl|bosTau2|chr18 (47896498-47896656) |
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1042-1200, gnl|canFam2|chr1 (111012850-111012625) |
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1042-1200, gnl|echTel1|scaffold_294744 (22138-22368) |
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1042-1200, gnl|fr1|chrUn (293547978-293547773) |
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1042-1200, gnl|hg17|chr19 (53335034-53335250) |
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1042-1200, gnl|Hg17|chr19 (53335213-53335055) |
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1042-1200, gnl|loxAfr1|scaffold_20661 (43919-43709) |
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1042-1200, gnl|mm7|chr7 (11882519-11882307) |
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1042-1200, gnl|Mm7|chr7 (11882339-11882497) |
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1042-1200, gnl|monDom2|scaffold_4 (50661268-50661466) |
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1042-1200, gnl|oryCun1|scaffold_170297 (7230-7019) |
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1042-1200, gnl|panTro1|chr20 (50604121-50604337) |
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1042-1200, gnl|rheMac2|chr19 (54420210-54420426) |
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1042-1200, gnl|rn3|chr1 (73830074-73829859) |
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1042-1200, gnl|tetNig1|chrUn_random (62060026-62060300) |
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1042-1200, gnl|xenTro1|scaffold_525 (22747-22941) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
219-365, gnl|bosTau2|chr18 (47887306-47887455) |
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219-365, gnl|Hg17|chr19 (53356587-53356441) |
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219-365, gnl|Mm7|chr7 (11872201-11872350) |
| |
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1042-1200, gnl|bosTau2|chr18 (47896498-47896656) |
|
1042-1200, gnl|canFam2|chr1 (111012850-111012625) |
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1042-1200, gnl|echTel1|scaffold_294744 (22138-22368) |
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1042-1200, gnl|fr1|chrUn (293547978-293547773) |
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1042-1200, gnl|hg17|chr19 (53335034-53335250) |
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1042-1200, gnl|Hg17|chr19 (53335213-53335055) |
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1042-1200, gnl|loxAfr1|scaffold_20661 (43919-43709) |
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1042-1200, gnl|mm7|chr7 (11882519-11882307) |
|
1042-1200, gnl|Mm7|chr7 (11882339-11882497) |
|
1042-1200, gnl|monDom2|scaffold_4 (50661268-50661466) |
|
1042-1200, gnl|oryCun1|scaffold_170297 (7230-7019) |
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1042-1200, gnl|panTro1|chr20 (50604121-50604337) |
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1042-1200, gnl|rheMac2|chr19 (54420210-54420426) |
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1042-1200, gnl|rn3|chr1 (73830074-73829859) |
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1042-1200, gnl|tetNig1|chrUn_random (62060026-62060300) |
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1042-1200, gnl|xenTro1|scaffold_525 (22747-22941) |
