Ss1.1-Thy1-THY010057A12.5
|
TGATTTTATCAACTTGCCTTTAGTCAATATGTACTTAGCCTAGCACTATATATTTGACTC
TAAGTGTTTAAGAAATCCTTTTTGCATATCCTCCACTTTTTCATTTCTAGAATACATAAA
AATCAAGTGTGCTAGGTTTAAGTTATTCAGCTTTCCAAATTCAAGGTAGGAAGAGATCTT
AATTATAAAATTAAAATAGTCCTGCTTCTGAAAAGATGGAATGAAAGTGCTTTCCCCTAT
TTTTCCCACTAAAGAGAGTTCAGCTTTAAATTACAGTTTAGACCTCTAGACATTAAGTAT
TTAAAAAACATAAAAAATTTATAAAAGATTGAGAGAAGACAGACCAGCTAGAGTACTTGG
GTCTCCAGAAATGACACGGTAATGAATGCTATGGATTTTCTTTCCTCAGCATGTATTCCA
GACTGGGCGCTGGAGAAGCCAGCAATCTGGGAATACCAATAAGCACAGAGAAGAAAAGCC
------------------------------------------------------------
------------------------ATAAAAAAATACAACCCCTTGCCCCACCAGCAGAGA
CTGAGAGAGGAGCCCAGACCTCCAGCCCCCTGATGGGGTGATGTCATGGAAGGTCCAATG
AGGGACTTTCGTCTCTGCTAGGCAGTGACAAGCCTCCCTGCTTCCCCAGATAGTGTCATT
GGGGACCATGTGGGGATCTAATCTTCCATTTCCTCCCAGCAGGACAAGGCACACCTCCCA
CTCCCTGTTGTGGTAGTGTCAGAAGAGACTAATAGAGCATTCACATTTTCAGCACTGAAA
AAATGAACCCCCATTCCTACTGCAGTGTCTTTGGAGGTCATGTAGGCAGTAGTAACCAGG
TACCCTCCTCCCAGCTGTGGTATTATCAGTGAAAGCCTAGTGGAGTGCAGAACTCCCATT
TCCACCTGGCAGTGATGAGGAGCCACTCAGTAAAAGACAAGTGGAAAAACCAAGATTTCT
ACCCCCATTTGAGAGAAATGAGGCAATACCTCCTTGGTCCCACCAGAACAGTGACAGAAG
------------------------------------------------------------
------------------------------------------------------------
------------------------AACACTGAGATAATACAGATGTTTAAATTATCTGAC
ACAGATCTGAAGGAGTTATTGTGAATATGTTTCAGTGAGCAATTACAAACAGATGAAAAT
TTTAAATTACAAAGTTATAGCAAAGAAGTAGAAAGTTTTAACAAAGACATAAAAGATGTA
AAGTAGAACCAACCAGAAGTTATAATAACTGAAATAAATTCAAGTGATGGGTTCAGCAGC
ACAGTAAAGGCTATAAAGAAAAGA------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------AAAAAAAAAAAAAAGAAAAGAAAA
GAATCTGGGAACTTAAAGGATAAAACAATAAAAATTACCTCATCTAAATAACAGTAAAAA
AAAAAAAGTGACAGAGCTTCATTGACCTCTAGGATTGTAGCAGTAAAGTTCTAACATTTG
TGTCATTGAAAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGATTTTATCAACTTGCCTTTAGTCAATATGTACTTAGCCTAGCACTATATATTTGACTC
TAAGTGTTTAAGAAATCCTTTTTGCATATCCTCCACTTTTTCATTTCTAGAATACATAAA
AATCAAGTGTGCTAGGTTTAAGTTATTCAGCTTTCCAAATTCAAGGTAGGAAGAGATCTT
AATTATAAAATTAAAATAGTCCTGCTTCTGAAAAGATGGAATGAAAGTGCTTTCCCCTAT
TTTTCCCACTAAAGAGAGTTCAGCTTTAAATTACAGTTTAGACCTCTAGACATTAAGTAT
TTAAAAAACATAAAAAATTTATAAAAGATTGAGAGAAGACAGACCAGCTAGAGTACTTGG
GTCTCCAGAAATGACACGGTAATGAATGCTATGGATTTTCTTTCCTCAGCATGTATTCCA
GACTGGGCGCTGGAGAAGCCAGCAATCTGGGAATACCAATAAGCACAGAGAAGAAAAGCC
------------------------------------------------------------
------------------------ATAAAAAAATACAACCCCTTGCCCCACCAGCAGAGA
CTGAGAGAGGAGCCCAGACCTCCAGCCCCCTGATGGGGTGATGTCATGGAAGGTCCAATG
AGGGACTTTCGTCTCTGCTAGGCAGTGACAAGCCTCCCTGCTTCCCCAGATAGTGTCATT
GGGGACCATGTGGGGATCTAATCTTCCATTTCCTCCCAGCAGGACAAGGCACACCTCCCA
CTCCCTGTTGTGGTAGTGTCAGAAGAGACTAATAGAGCATTCACATTTTCAGCACTGAAA
AAATGAACCCCCATTCCTACTGCAGTGTCTTTGGAGGTCATGTAGGCAGTAGTAACCAGG
TACCCTCCTCCCAGCTGTGGTATTATCAGTGAAAGCCTAGTGGAGTGCAGAACTCCCATT
TCCACCTGGCAGTGATGAGGAGCCACTCAGTAAAAGACAAGTGGAAAAACCAAGATTTCT
ACCCCCATTTGAGAGAAATGAGGCAATACCTCCTTGGTCCCACCAGAACAGTGACAGAAG
------------------------------------------------------------
------------------------------------------------------------
------------------------AACACTGAGATAATACAGATGTTTAAATTATCTGAC
ACAGATCTGAAGGAGTTATTGTGAATATGTTTCAGTGAGCAATTACAAACAGATGAAAAT
TTTAAATTACAAAGTTATAGCAAAGAAGTAGAAAGTTTTAACAAAGACATAAAAGATGTA
AAGTAGAACCAACCAGAAGTTATAATAACTGAAATAAATTCAAGTGATGGGTTCAGCAGC
ACAGTAAAGGCTATAAAGAAAAGA------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------AAAAAAAAAAAAAAGAAAAGAAAA
GAATCTGGGAACTTAAAGGATAAAACAATAAAAATTACCTCATCTAAATAACAGTAAAAA
AAAAAAAGTGACAGAGCTTCATTGACCTCTAGGATTGTAGCAGTAAAGTTCTAACATTTG
TGTCATTGAAAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-481, gnl|bosTau2|chr24 (25478285-25478775) |
|
3-481, gnl|Hg17|chr18 (16848622-16848153) |
| |
|
623-904, gnl|bosTau2|chr24 (25479012-25479294) |
|
623-904, gnl|dasNov1|scaffold_23154 (6063-5573) |
|
623-904, gnl|echTel1|scaffold_310314 (46486-46073) |
|
623-904, gnl|hg17|chr18 (16847182-16847739) |
|
623-904, gnl|Hg17|chr18 (16847662-16847314) |
|
623-904, gnl|panTro1|chr17 (12752783-12753341) |
|
623-904, gnl|rheMac2|chr18 (14009641-14010136) |
| |
|
984-1236, gnl|bosTau2|chr24 (25479536-25479779) |
|
984-1236, gnl|hg17|chr18 (16846210-16847181) |
|
984-1236, gnl|Hg17|chr18 (16847080-16846846) |
|
984-1236, gnl|panTro1|chr17 (12751815-12752782) |
|
984-1236, gnl|rheMac2|chr18 (14008679-14009640) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-481, gnl|bosTau2|chr24 (25478285-25478775) |
|
3-481, gnl|Hg17|chr18 (16848622-16848153) |
| |
|
623-904, gnl|bosTau2|chr24 (25479012-25479294) |
|
623-904, gnl|dasNov1|scaffold_23154 (6063-5573) |
|
623-904, gnl|echTel1|scaffold_310314 (46486-46073) |
|
623-904, gnl|hg17|chr18 (16847182-16847739) |
|
623-904, gnl|Hg17|chr18 (16847662-16847314) |
|
623-904, gnl|panTro1|chr17 (12752783-12753341) |
|
623-904, gnl|rheMac2|chr18 (14009641-14010136) |
| |
|
984-1236, gnl|bosTau2|chr24 (25479536-25479779) |
|
984-1236, gnl|hg17|chr18 (16846210-16847181) |
|
984-1236, gnl|Hg17|chr18 (16847080-16846846) |
|
984-1236, gnl|panTro1|chr17 (12751815-12752782) |
|
984-1236, gnl|rheMac2|chr18 (14008679-14009640) |
