Non-Coding RNA Search

Ss1.1-Thy1-THY010057G09.5

Sequence:


               
               GCCTGGCGCCGTCTTGATACTTTCAGAAAGAATGCATTCCCTGTAAAAAAAAAAAAAAAA
AAAAAAAAAAAATACTGAGAGAGAGGGAGAGAGAGAGGGAGGAAAAGAGAGAGAGACGGA
GAGAGCGCGAGACAGAGCGAGCCACGCAATCTGACCGAGCAGTTTCTGCTCGCCCAGGTC
ACACGCCTCCTTCTCCTCTCTGCTCCTCGCTACCCAGGTGACCCAGGAGAGACTCAGTCT
CGGAGCGGCCGAGGAGCCTCACGCGCAGAATCCCAGCCAGCCCTCGCCTCCTTTTGCACT
TCGGGCCCCTTTTATCCTTTCCTACCTATTTTTTTGGAATTTCTTTTTTCTCCGTCTTCT
TCTCTTTGCTAAACTACCCCTCAAAGATTTTTTTTTTTTTTGAAATCTCATTTGCTCACC
TTTCTTCCTAGCTTTCCCATTCCCCCACTGAAAACAAATCCTTGAACGACCCCTGCTCCT
CCGACGGCAGGAGCACCTGCAGAGCCGCGGAGCCCCCCGGACCGCCCTCCCTCTCCGCGC
GCGGGTTCCGGGCCCGGCGAGAGGGCGCGAGCGCAGCCTGGGCCATGGAGGTGACGGCGG
ACCAGCCGCGTTGGGTGAGCCACCACCACCCCGCGGTCCTCAACGGGCAGCACCCGGACA
CGCACCACCCGGGCCTCGGCCACTCCTACATGGACCCGGCGCAGTACCCCTTGCCCGAGG
AGGTGGATGTACTTTTTAACATCGACGGTCAAGGCAACCACGTCCCGTCCTACTACGGAA
ACTCGGTGAGGGCCACCGTGCAGAGGTACCCTCCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGCGCCGTCTTGATACTTTCAGAAAGAATGCATTCCCTGTAAAAAAAAAAAAAAAA
AAAAAAAAAAAATACTGAGAGAGAGGGAGAGAGAGAGGGAGGAAAAGAGAGAGAGACGGA
GAGAGCGCGAGACAGAGCGAGCCACGCAATCTGACCGAGCAGTTTCTGCTCGCCCAGGTC
ACACGCCTCCTTCTCCTCTCTGCTCCTCGCTACCCAGGTGACCCAGGAGAGACTCAGTCT
CGGAGCGGCCGAGGAGCCTCACGCGCAGAATCCCAGCCAGCCCTCGCCTCCTTTTGCACT
TCGGGCCCCTTTTATCCTTTCCTACCTATTTTTTTGGAATTTCTTTTTTCTCCGTCTTCT
TCTCTTTGCTAAACTACCCCTCAAAGATTTTTTTTTTTTTTGAAATCTCATTTGCTCACC
TTTCTTCCTAGCTTTCCCATTCCCCCACTGAAAACAAATCCTTGAACGACCCCTGCTCCT
CCGACGGCAGGAGCACCTGCAGAGCCGCGGAGCCCCCCGGACCGCCCTCCCTCTCCGCGC
GCGGGTTCCGGGCCCGGCGAGAGGGCGCGAGCGCAGCCTGGGCCATGGAGGTGACGGCGG
ACCAGCCGCGTTGGGTGAGCCACCACCACCCCGCGGTCCTCAACGGGCAGCACCCGGACA
CGCACCACCCGGGCCTCGGCCACTCCTACATGGACCCGGCGCAGTACCCCTTGCCCGAGG
AGGTGGATGTACTTTTTAACATCGACGGTCAAGGCAACCACGTCCCGTCCTACTACGGAA
ACTCGGTGAGGGCCACCGTGCAGAGGTACCCTCCGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-219, - strand, RNAz p=0.999951

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-219, - strand, RNAz p=0.999951

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               138-219, BP163304 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP163304.1|), blast E-value=2e-37, identity=100% 
               

               
               138-219, BP164745 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP164745.1|), blast E-value=2e-37, identity=100% 
               

               
               138-219, BP167720 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP167720.1|), blast E-value=2e-37, identity=100% 
               

               
               138-219, BW968948 full-length enriched swine cDNA library, adult periphral 
(dbj|BW968948.1|), blast E-value=2e-37, identity=100% 
               

               
               138-219, BW969293 full-length enriched swine cDNA library, adult periphral 
(dbj|BW969293.1|), blast E-value=2e-37, identity=100% 
               

               
               138-219, BW969491 full-length enriched swine cDNA library, adult periphral 
(dbj|BW969491.1|), blast E-value=2e-37, identity=100%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               138-219, BP163304 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP163304.1|), blast E-value=2e-37, identity=100% 
               

               
               138-219, BP164745 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP164745.1|), blast E-value=2e-37, identity=100% 
               

               
               138-219, BP167720 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP167720.1|), blast E-value=2e-37, identity=100% 
               

               
               138-219, BW968948 full-length enriched swine cDNA library, adult periphral 
(dbj|BW968948.1|), blast E-value=2e-37, identity=100% 
               

               
               138-219, BW969293 full-length enriched swine cDNA library, adult periphral 
(dbj|BW969293.1|), blast E-value=2e-37, identity=100% 
               

               
               138-219, BW969491 full-length enriched swine cDNA library, adult periphral 
(dbj|BW969491.1|), blast E-value=2e-37, identity=100%

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-219, gnl|bosTau2|chr13 (6806171-6806375)
               

               
               1-219, gnl|Hg17|chr10 (8136669-8136862)
               

               
               1-219, gnl|Mm7|chr2 (9817736-9817561)
               


               
               252-816, gnl|bosTau2|chr13 (6806846-6807414)
               

               
               252-816, gnl|Hg17|chr10 (8137306-8137856)
               

               
               252-816, gnl|Mm7|chr2 (9817096-9816519)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-219, gnl|bosTau2|chr13 (6806171-6806375)
               

               
               1-219, gnl|Hg17|chr10 (8136669-8136862)
               

               
               1-219, gnl|Mm7|chr2 (9817736-9817561)
               


               
               252-816, gnl|bosTau2|chr13 (6806846-6807414)
               

               
               252-816, gnl|Hg17|chr10 (8137306-8137856)
               

               
               252-816, gnl|Mm7|chr2 (9817096-9816519)

	138-219, BP163304 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP163304.1\|), blast E-value=2e-37, identity=100%
	138-219, BP164745 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP164745.1\|), blast E-value=2e-37, identity=100%
	138-219, BP167720 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP167720.1\|), blast E-value=2e-37, identity=100%
	138-219, BW968948 full-length enriched swine cDNA library, adult periphral (dbj\|BW968948.1\|), blast E-value=2e-37, identity=100%
	138-219, BW969293 full-length enriched swine cDNA library, adult periphral (dbj\|BW969293.1\|), blast E-value=2e-37, identity=100%
	138-219, BW969491 full-length enriched swine cDNA library, adult periphral (dbj\|BW969491.1\|), blast E-value=2e-37, identity=100%

	1-219, gnl\|bosTau2\|chr13 (6806171-6806375)
	1-219, gnl\|Hg17\|chr10 (8136669-8136862)
	1-219, gnl\|Mm7\|chr2 (9817736-9817561)

	252-816, gnl\|bosTau2\|chr13 (6806846-6807414)
	252-816, gnl\|Hg17\|chr10 (8137306-8137856)
	252-816, gnl\|Mm7\|chr2 (9817096-9816519)