Ss1.1-Thy1-THY010060G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTAGGTTGGCTGGTTATTTTGCAAGCGGGAGGGGCCGTGCGCGCTCCTGCCTCCGGCT TCTGTCCCCCACCCCCCCTTCCCCGGTCCCGGTTTCTCCTTCGGAAAGATGTCGGACACG GCAGTAGCTGACACTCGGCGCCTTAACTCGAAGCCGCAGGACCTGACCGACGCTTACGGG CCGCCAAGTAACTTCCTGGAGATCGACATCTTTAATCCACAGACGGTGGGCGTGGGCCGG GCGCGCTTCACCACCTATGAGGTTCGCATGCGGACAAATCTACCTATCTTCAAGCTGAAG GAGTCCTGTGTACGGCGGCGCTACAGTGACTTTGAGTGGCTAAAAAATGAGCTGGAGCGA GATAGTAAGATTGTAGTACCACCACTACCTGGGAAAGCCTTAAAGCGGCAGCTCCCTTTT CGAGGAGACGAAGGGATCTTTGAGGAGTCCTTTATTGAAGAAAGGAGGCAGGGCCTCGAA CAGTTTATTAACAAAATTGCTGGGCACCCACTGGCTCAGAACGAACGCTGCCTACACATG TTCCTGCAGGAGGAGGCAATTGATAGGAACTACGTCCCCGGGAAGGTGCGCCAGTAGGAG CCCCTCTCACCACTTGCCCTCTACTTTCCTGCTGAAATGACATTGGTTTTTACACTAAGC CTCTCTCTCTCTTTGATCTGAAGTTGGCTGCCCGTCCCCTGGCCTGATAAGACTGTCTGG CATTGTGTTCCTTGGTACCTACCATACCATGGGCACTCTGCTAGGATCCTCTTCTCTGAG GAGAGGTGGGAAACCACACAGGCAGATGCCCTTTGCTTGGGGTTGGGGGGTGGGGGGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTAGGTTGGCTGGTTATTTTGCAAGCGGGAGGGGCCGTGCGCGCTCCTGCCTCCGGCT TCTGTCCCCCACCCCCCCTTCCCCGGTCCCGGTTTCTCCTTCGGAAAGATGTCGGACACG GCAGTAGCTGACACTCGGCGCCTTAACTCGAAGCCGCAGGACCTGACCGACGCTTACGGG CCGCCAAGTAACTTCCTGGAGATCGACATCTTTAATCCACAGACGGTGGGCGTGGGCCGG GCGCGCTTCACCACCTATGAGGTTCGCATGCGGACAAATCTACCTATCTTCAAGCTGAAG GAGTCCTGTGTACGGCGGCGCTACAGTGACTTTGAGTGGCTAAAAAATGAGCTGGAGCGA GATAGTAAGATTGTAGTACCACCACTACCTGGGAAAGCCTTAAAGCGGCAGCTCCCTTTT CGAGGAGACGAAGGGATCTTTGAGGAGTCCTTTATTGAAGAAAGGAGGCAGGGCCTCGAA CAGTTTATTAACAAAATTGCTGGGCACCCACTGGCTCAGAACGAACGCTGCCTACACATG TTCCTGCAGGAGGAGGCAATTGATAGGAACTACGTCCCCGGGAAGGTGCGCCAGTAGGAG CCCCTCTCACCACTTGCCCTCTACTTTCCTGCTGAAATGACATTGGTTTTTACACTAAGC CTCTCTCTCTCTTTGATCTGAAGTTGGCTGCCCGTCCCCTGGCCTGATAAGACTGTCTGG CATTGTGTTCCTTGGTACCTACCATACCATGGGCACTCTGCTAGGATCCTCTTCTCTGAG GAGAGGTGGGAAACCACACAGGCAGATGCCCTTTGCTTGGGGTTGGGGGGTGGGGGGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 501-602, - strand, RNAz p=0.956359 | |
| 716-826, + strand, RNAz p=0.94022 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 501-602, - strand, RNAz p=0.956359 | |
| 716-826, + strand, RNAz p=0.94022 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_013346, + |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 81-835, gnl|bosTau2|chr25 (2618942-2618165) | |
| 81-835, gnl|Hg17|chrX (70071205-70063641) | |
| 81-835, gnl|Mm7|chrX (96549807-96540876) | |
| 124-261, gnl|bosTau2|chr11 (84780636-84780773) | |
| 124-261, gnl|canFam2|chr12 (68324416-68324595) | |
| 124-261, gnl|canFam2|chr12 (68324411-68324585) | |
| 124-261, gnl|canFam2|chr12 (68324416-68324612) | |
| 124-261, gnl|danRer3|chr20 (28827389-28827241) | |
| 124-261, gnl|danRer3|chr21 (17203299-17203474) | |
| 124-261, gnl|danRer3|chr21 (17203299-17203466) | |
| 124-261, gnl|dasNov1|scaffold_38613 (7272-7438) | |
| 124-261, gnl|dasNov1|scaffold_38613 (7276-7430) | |
| 124-261, gnl|dasNov1|scaffold_38613 (7272-7452) | |
| 124-261, gnl|echTel1|scaffold_308567 (22989-22812) | |
| 124-261, gnl|echTel1|scaffold_308567 (22993-22819) | |
| 124-261, gnl|echTel1|scaffold_308567 (22997-22795) | |
| 124-261, gnl|fr1|chrUn (210144737-210144916) | |
| 124-261, gnl|fr1|chrUn (210144740-210144890) | |
| 124-261, gnl|fr1|chrUn (210144737-210144908) | |
| 124-261, gnl|galGal2|chr3 (65867252-65867062) | |
| 124-261, gnl|galGal2|chr3 (65867257-65867106) | |
| 124-261, gnl|galGal2|chr3 (65867252-65867052) | |
| 124-261, gnl|hg17|chr6 (108688652-108688826) | |
| 124-261, gnl|Hg17|chr6 (108688806-108688669) | |
| 124-261, gnl|hg17|chrX (91576473-91576678) | |
| 124-261, gnl|hg17|chrY (5545889-5546072) | |
| 124-261, gnl|loxAfr1|scaffold_6367 (47701-47878) | |
| 124-261, gnl|loxAfr1|scaffold_6367 (47697-47871) | |
| 124-261, gnl|loxAfr1|scaffold_6367 (47693-47895) | |
| 124-261, gnl|mm7|chr10 (42313155-42312979) | |
| 124-261, gnl|mm7|chr10 (42313160-42312986) | |
| 124-261, gnl|mm7|chr10 (42313155-42312963) | |
| 124-261, gnl|Mm7|chr10 (42313004-42313141) | |
| 124-261, gnl|monDom2|scaffold_0 (112374590-112374405) | |
| 124-261, gnl|monDom2|scaffold_0 (112374586-112374412) | |
| 124-261, gnl|monDom2|scaffold_0 (112374590-112374389) | |
| 124-261, gnl|oryCun1|scaffold_213415 (54611-54426) | |
| 124-261, gnl|oryCun1|scaffold_213415 (54607-54433) | |
| 124-261, gnl|oryCun1|scaffold_213415 (54611-54409) | |
| 124-261, gnl|panTro1|chr5 (110988661-110988835) | |
| 124-261, gnl|panTro1|chrX (94386874-94387057) | |
| 124-261, gnl|panTro1|chrX (94386874-94387082) | |
| 124-261, gnl|rheMac2|chr4 (155617352-155617178) | |
| 124-261, gnl|rheMac2|chrX (91222563-91222748) | |
| 124-261, gnl|rheMac2|chrX (91222563-91222767) | |
| 124-261, gnl|rn3|chr20 (2649442-2649288) | |
| 124-261, gnl|rn3|chr20 (2649438-2649295) | |
| 124-261, gnl|rn3|chr20 (2649442-2649281) | |
| 124-261, gnl|tetNig1|chr14 (3441690-3441518) | |
| 124-261, gnl|tetNig1|chr14 (3441695-3441544) | |
| 124-261, gnl|tetNig1|chr14 (3441690-3441507) | |
| 124-261, gnl|xenTro1|scaffold_975 (179759-179590) | |
| 124-261, gnl|xenTro1|scaffold_975 (179763-179590) | |
| 124-261, gnl|xenTro1|scaffold_975 (179759-179590) | |
| 368-494, gnl|bosTau2|chr11 (85022438-85022312) | |
| 368-494, gnl|canFam2|chr12 (68284789-68284960) | |
| 368-494, gnl|danRer3|chrUn (145020972-145021124) | |
| 368-494, gnl|dasNov1|scaffold_34574 (17150-17035) | |
| 368-494, gnl|echTel1|scaffold_315301 (86360-86198) | |
| 368-494, gnl|fr1|chrUn (210138553-210138723) | |
| 368-494, gnl|galGal2|chr3 (65881412-65881260) | |
| 368-494, gnl|hg17|chr6 (108642384-108642544) | |
| 368-494, gnl|Hg17|chr6 (108642521-108642395) | |
| 368-494, gnl|loxAfr1|scaffold_6367 (18962-19126) | |
| 368-494, gnl|mm7|chr10 (42343957-42343805) | |
| 368-494, gnl|Mm7|chr10 (42343818-42343944) | |
| 368-494, gnl|monDom2|scaffold_0 (112412331-112412169) | |
| 368-494, gnl|oryCun1|scaffold_157604 (4074-3916) | |
| 368-494, gnl|panTro1|chr5 (110942431-110942591) | |
| 368-494, gnl|rheMac2|chr4 (155663925-155663765) | |
| 368-494, gnl|rn3|chr20 (2649654-2649526) | |
| 368-494, gnl|tetNig1|chr14 (3447821-3447672) | |
| 368-494, gnl|xenTro1|scaffold_975 (194747-194607) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-835, gnl|bosTau2|chr25 (2618942-2618165) | |
| 81-835, gnl|Hg17|chrX (70071205-70063641) | |
| 81-835, gnl|Mm7|chrX (96549807-96540876) | |
| 124-261, gnl|bosTau2|chr11 (84780636-84780773) | |
| 124-261, gnl|canFam2|chr12 (68324416-68324595) | |
| 124-261, gnl|canFam2|chr12 (68324411-68324585) | |
| 124-261, gnl|canFam2|chr12 (68324416-68324612) | |
| 124-261, gnl|danRer3|chr20 (28827389-28827241) | |
| 124-261, gnl|danRer3|chr21 (17203299-17203474) | |
| 124-261, gnl|danRer3|chr21 (17203299-17203466) | |
| 124-261, gnl|dasNov1|scaffold_38613 (7272-7438) | |
| 124-261, gnl|dasNov1|scaffold_38613 (7276-7430) | |
| 124-261, gnl|dasNov1|scaffold_38613 (7272-7452) | |
| 124-261, gnl|echTel1|scaffold_308567 (22989-22812) | |
| 124-261, gnl|echTel1|scaffold_308567 (22993-22819) | |
| 124-261, gnl|echTel1|scaffold_308567 (22997-22795) | |
| 124-261, gnl|fr1|chrUn (210144737-210144916) | |
| 124-261, gnl|fr1|chrUn (210144740-210144890) | |
| 124-261, gnl|fr1|chrUn (210144737-210144908) | |
| 124-261, gnl|galGal2|chr3 (65867252-65867062) | |
| 124-261, gnl|galGal2|chr3 (65867257-65867106) | |
| 124-261, gnl|galGal2|chr3 (65867252-65867052) | |
| 124-261, gnl|hg17|chr6 (108688652-108688826) | |
| 124-261, gnl|Hg17|chr6 (108688806-108688669) | |
| 124-261, gnl|hg17|chrX (91576473-91576678) | |
| 124-261, gnl|hg17|chrY (5545889-5546072) | |
| 124-261, gnl|loxAfr1|scaffold_6367 (47701-47878) | |
| 124-261, gnl|loxAfr1|scaffold_6367 (47697-47871) | |
| 124-261, gnl|loxAfr1|scaffold_6367 (47693-47895) | |
| 124-261, gnl|mm7|chr10 (42313155-42312979) | |
| 124-261, gnl|mm7|chr10 (42313160-42312986) | |
| 124-261, gnl|mm7|chr10 (42313155-42312963) | |
| 124-261, gnl|Mm7|chr10 (42313004-42313141) | |
| 124-261, gnl|monDom2|scaffold_0 (112374590-112374405) | |
| 124-261, gnl|monDom2|scaffold_0 (112374586-112374412) | |
| 124-261, gnl|monDom2|scaffold_0 (112374590-112374389) | |
| 124-261, gnl|oryCun1|scaffold_213415 (54611-54426) | |
| 124-261, gnl|oryCun1|scaffold_213415 (54607-54433) | |
| 124-261, gnl|oryCun1|scaffold_213415 (54611-54409) | |
| 124-261, gnl|panTro1|chr5 (110988661-110988835) | |
| 124-261, gnl|panTro1|chrX (94386874-94387057) | |
| 124-261, gnl|panTro1|chrX (94386874-94387082) | |
| 124-261, gnl|rheMac2|chr4 (155617352-155617178) | |
| 124-261, gnl|rheMac2|chrX (91222563-91222748) | |
| 124-261, gnl|rheMac2|chrX (91222563-91222767) | |
| 124-261, gnl|rn3|chr20 (2649442-2649288) | |
| 124-261, gnl|rn3|chr20 (2649438-2649295) | |
| 124-261, gnl|rn3|chr20 (2649442-2649281) | |
| 124-261, gnl|tetNig1|chr14 (3441690-3441518) | |
| 124-261, gnl|tetNig1|chr14 (3441695-3441544) | |
| 124-261, gnl|tetNig1|chr14 (3441690-3441507) | |
| 124-261, gnl|xenTro1|scaffold_975 (179759-179590) | |
| 124-261, gnl|xenTro1|scaffold_975 (179763-179590) | |
| 124-261, gnl|xenTro1|scaffold_975 (179759-179590) | |
| 368-494, gnl|bosTau2|chr11 (85022438-85022312) | |
| 368-494, gnl|canFam2|chr12 (68284789-68284960) | |
| 368-494, gnl|danRer3|chrUn (145020972-145021124) | |
| 368-494, gnl|dasNov1|scaffold_34574 (17150-17035) | |
| 368-494, gnl|echTel1|scaffold_315301 (86360-86198) | |
| 368-494, gnl|fr1|chrUn (210138553-210138723) | |
| 368-494, gnl|galGal2|chr3 (65881412-65881260) | |
| 368-494, gnl|hg17|chr6 (108642384-108642544) | |
| 368-494, gnl|Hg17|chr6 (108642521-108642395) | |
| 368-494, gnl|loxAfr1|scaffold_6367 (18962-19126) | |
| 368-494, gnl|mm7|chr10 (42343957-42343805) | |
| 368-494, gnl|Mm7|chr10 (42343818-42343944) | |
| 368-494, gnl|monDom2|scaffold_0 (112412331-112412169) | |
| 368-494, gnl|oryCun1|scaffold_157604 (4074-3916) | |
| 368-494, gnl|panTro1|chr5 (110942431-110942591) | |
| 368-494, gnl|rheMac2|chr4 (155663925-155663765) | |
| 368-494, gnl|rn3|chr20 (2649654-2649526) | |
| 368-494, gnl|tetNig1|chr14 (3447821-3447672) | |
| 368-494, gnl|xenTro1|scaffold_975 (194747-194607) |