Non-Coding RNA Search

Ss1.1-Thy1-THY010062F06.5

Sequence:


               
               AGAGCTGGAACTATGACCACCCTTCCTGTAAACATCCTCCCCCACGCAAGGAGCACTTCC
AGAAGAAAAGACGAGACTCCGAGGCCTTTTACGAGCCTCATTTCGTCTCACAGTCCATAC
AGCGGCAATCTGCAGATTCTCCTCAGAGCCTCCTCCTCCTCACAACGCCCGTCCTCAGGC
CCTGGAGCTTCTGGACAAAGCCCGGCCTCCCGGCCATCATCGCCTCCGCCTCGGGGACCT
CCTCCAGAAAAGACGTCGTAGAACCACCTAGATTCTACCTACTTGGTTGGCCAATAGTTC
TGTAGTGGAAAGCAAACCAGCAACAATAACAATAATAATAAAACACATTTGTACAGCTCG
TGGTGCTCATTTGTATCCCGTGTTAGGACTTCGCAATTGGGCGAAGTAGGCACCTGTCGG
TAGAAGTAGCAGCTGGACAGCGAAAAGGAGAGCGGGCCCATAGAAGGGAATGGCAGGTAC
AGTCGATTAAGCCAGGGAAACTGGTACCTGGCAGGTAGGAAATCGGCGCCAGAGGGCTTG
TCAATAGCGCCGCGGATGGAAAAGGTTTTATTTTCCTCTCAAGAGGCTCCCCCCATTCCG
TGCATCCCTGTGCAGCCTCGGAGGGCTCAATTCCTTTGCTGCTCTGTTCCGTACCCCCCC
CCCCCTTGGGAAGGTGGCTCTGTCCTCCCCGCACGCGACGCGCTGGCGGTTGGCCGGCTG
CGGGAAGCTTCTGATTGGCCGAGTCGCAGAAGCACCGGGTGAAAAGAGCTTCACTGGCGG
CGCGCCCCCACTCGGGGCGTAGCCAACGCCGTACGGGAAAATGGCGGCCCGCATGTACCT
TGAGAGGCCCCGAATGGGGGATGGAGGGGCGCAAATCCGCCCCCTGCAGGTCAGGGAGAA
AGGCGCCTCAGACTATGTGGGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCTGGAACTATGACCACCCTTCCTGTAAACATCCTCCCCCACGCAAGGAGCACTTCC
AGAAGAAAAGACGAGACTCCGAGGCCTTTTACGAGCCTCATTTCGTCTCACAGTCCATAC
AGCGGCAATCTGCAGATTCTCCTCAGAGCCTCCTCCTCCTCACAACGCCCGTCCTCAGGC
CCTGGAGCTTCTGGACAAAGCCCGGCCTCCCGGCCATCATCGCCTCCGCCTCGGGGACCT
CCTCCAGAAAAGACGTCGTAGAACCACCTAGATTCTACCTACTTGGTTGGCCAATAGTTC
TGTAGTGGAAAGCAAACCAGCAACAATAACAATAATAATAAAACACATTTGTACAGCTCG
TGGTGCTCATTTGTATCCCGTGTTAGGACTTCGCAATTGGGCGAAGTAGGCACCTGTCGG
TAGAAGTAGCAGCTGGACAGCGAAAAGGAGAGCGGGCCCATAGAAGGGAATGGCAGGTAC
AGTCGATTAAGCCAGGGAAACTGGTACCTGGCAGGTAGGAAATCGGCGCCAGAGGGCTTG
TCAATAGCGCCGCGGATGGAAAAGGTTTTATTTTCCTCTCAAGAGGCTCCCCCCATTCCG
TGCATCCCTGTGCAGCCTCGGAGGGCTCAATTCCTTTGCTGCTCTGTTCCGTACCCCCCC
CCCCCTTGGGAAGGTGGCTCTGTCCTCCCCGCACGCGACGCGCTGGCGGTTGGCCGGCTG
CGGGAAGCTTCTGATTGGCCGAGTCGCAGAAGCACCGGGTGAAAAGAGCTTCACTGGCGG
CGCGCCCCCACTCGGGGCGTAGCCAACGCCGTACGGGAAAATGGCGGCCCGCATGTACCT
TGAGAGGCCCCGAATGGGGGATGGAGGGGCGCAAATCCGCCCCCTGCAGGTCAGGGAGAA
AGGCGCCTCAGACTATGTGGGCGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               770-889, - strand, RNAz p=0.596141

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               770-889, - strand, RNAz p=0.596141

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-924, gnl|bosTau2|chr23 (5856180-5855326)
               

               
               61-924, gnl|Hg17|chr6 (33399669-33398835)
               

               
               61-924, gnl|Mm7|chr17 (31987118-31987925)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-924, gnl|bosTau2|chr23 (5856180-5855326)
               

               
               61-924, gnl|Hg17|chr6 (33399669-33398835)
               

               
               61-924, gnl|Mm7|chr17 (31987118-31987925)

	61-924, gnl\|bosTau2\|chr23 (5856180-5855326)
	61-924, gnl\|Hg17\|chr6 (33399669-33398835)
	61-924, gnl\|Mm7\|chr17 (31987118-31987925)