Non-Coding RNA Search

Ss1.1-Thy1-THY010063A05.5

Sequence:


               
               TCTATTTAAAAGAAAATAACACAACCTTGAAAAACAGTAAATATGTAAAGAGAAAATTTT
TCAGCTGATATTGGAAGATCTGACCCAGGTTACACATAAATCTCTCAGACAAGAGCTGCA
GGGCAAGCCATAATTTCCGAGAGTAAAAGAGAAAATGAAAGCTATAGCTAGTGCCTTCTC
TAAGTTACGTAAGTGGATTCATTTTAGTTTTCTGATTGTGCTTCTGAATATAATGTAAAA
GGGCTGATAGCAAGGTCCAGTTTACCTTTGTGTGTGAAAAAATACCTCTACAAAGATAGA
GACATAGTACGAGCCTTCCAAAGTTGCTTTTTATCACCAGAGTCATTGACTAAATAGTTA
AAGCCTCATAAGCAAACTTTTGCATTGGCAGTTTCCTTTTCAGGTTTGTTTTCTTGAGTC
ATAAGTCATGTTATAGGAGATTTTCTGTTGCCAACTGTGTAGTCCTTGCAAGGAAATACA
AGGTAAACGTTATGACAGTAATACCCTAAGACCTAACTGGTATTTAGACCTGCCTGTTGT
GAAGTCATTGTTCCCCATTTAAACACACAAAGGTCTGTCTTATATTAGAATGAGGCATAA
TTGTCTGCTATTAGTGTGGCTTAAAGATCTCAGATCTAATGGCTGATGAAAGGAAAAAAA
GCTTTGCCCAGAAGAAGGAAGAGGTTTATTTAACTAGTGTTCCAAAATGCTACTAGTTCT
AGGTACTGATTAACAAAACGTATGACTAGAGCAGTTGTCATTCTGTTCTTTGTCCTCAAG
TATTAGTTAGACCTAGAAAACTCAACACAAACTGAATGTACAAGCAGGAAGGTGGACTTG
GACAGAGGAGTTATAAACAGCATCTCATATGTTGGGAGGTGCAGGCAGTACATCAGCCCT
AACAGTGTTATCGTGTTCCTCTGAACTCTGCTCTCCCAGCTAAGCATTTGGAAGGCAGAC
CCAGGATAAAGAGAGGCATTCACGAAGCTAACATTTTATATTGAATACCCTTAGTACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTATTTAAAAGAAAATAACACAACCTTGAAAAACAGTAAATATGTAAAGAGAAAATTTT
TCAGCTGATATTGGAAGATCTGACCCAGGTTACACATAAATCTCTCAGACAAGAGCTGCA
GGGCAAGCCATAATTTCCGAGAGTAAAAGAGAAAATGAAAGCTATAGCTAGTGCCTTCTC
TAAGTTACGTAAGTGGATTCATTTTAGTTTTCTGATTGTGCTTCTGAATATAATGTAAAA
GGGCTGATAGCAAGGTCCAGTTTACCTTTGTGTGTGAAAAAATACCTCTACAAAGATAGA
GACATAGTACGAGCCTTCCAAAGTTGCTTTTTATCACCAGAGTCATTGACTAAATAGTTA
AAGCCTCATAAGCAAACTTTTGCATTGGCAGTTTCCTTTTCAGGTTTGTTTTCTTGAGTC
ATAAGTCATGTTATAGGAGATTTTCTGTTGCCAACTGTGTAGTCCTTGCAAGGAAATACA
AGGTAAACGTTATGACAGTAATACCCTAAGACCTAACTGGTATTTAGACCTGCCTGTTGT
GAAGTCATTGTTCCCCATTTAAACACACAAAGGTCTGTCTTATATTAGAATGAGGCATAA
TTGTCTGCTATTAGTGTGGCTTAAAGATCTCAGATCTAATGGCTGATGAAAGGAAAAAAA
GCTTTGCCCAGAAGAAGGAAGAGGTTTATTTAACTAGTGTTCCAAAATGCTACTAGTTCT
AGGTACTGATTAACAAAACGTATGACTAGAGCAGTTGTCATTCTGTTCTTTGTCCTCAAG
TATTAGTTAGACCTAGAAAACTCAACACAAACTGAATGTACAAGCAGGAAGGTGGACTTG
GACAGAGGAGTTATAAACAGCATCTCATATGTTGGGAGGTGCAGGCAGTACATCAGCCCT
AACAGTGTTATCGTGTTCCTCTGAACTCTGCTCTCCCAGCTAAGCATTTGGAAGGCAGAC
CCAGGATAAAGAGAGGCATTCACGAAGCTAACATTTTATATTGAATACCCTTAGTACCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               41-160, - strand, RNAz p=0.520706

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.520706

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-482, gnl|bosTau2|chr10 (7572417-7572899)
               

               
               2-482, gnl|Hg17|chr15 (65823778-65824281)
               

               
               2-482, gnl|Mm7|chr9 (63249294-63248822)
               


               
               507-1018, gnl|bosTau2|chr10 (7572896-7573405)
               

               
               507-1018, gnl|Hg17|chr15 (65824252-65824783)
               

               
               507-1018, gnl|Mm7|chr9 (63248849-63248341)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-482, gnl|bosTau2|chr10 (7572417-7572899)
               

               
               2-482, gnl|Hg17|chr15 (65823778-65824281)
               

               
               2-482, gnl|Mm7|chr9 (63249294-63248822)
               


               
               507-1018, gnl|bosTau2|chr10 (7572896-7573405)
               

               
               507-1018, gnl|Hg17|chr15 (65824252-65824783)
               

               
               507-1018, gnl|Mm7|chr9 (63248849-63248341)

	2-482, gnl\|bosTau2\|chr10 (7572417-7572899)
	2-482, gnl\|Hg17\|chr15 (65823778-65824281)
	2-482, gnl\|Mm7\|chr9 (63249294-63248822)

	507-1018, gnl\|bosTau2\|chr10 (7572896-7573405)
	507-1018, gnl\|Hg17\|chr15 (65824252-65824783)
	507-1018, gnl\|Mm7\|chr9 (63248849-63248341)