Non-Coding RNA Search

Ss1.1-Thy1-THY010064D09.5

Sequence:


               
               GGTAGAACCTTATCTGGTTGTTATTATATTTGTCACAAAAATGGTTCTAATGAATAAACA
AACATATTTTGAAGTTGCATGCTCTTAGAGAATTGCCACATACTTTGGACAGCTTGCCGT
TTTCCCTTCCCCCTTAACCAGGTAAAGACTGAAGTCGTAAAAGAGGTGGCAGCTGCGCGG
CGGAAACAGCACCTTTCATCCCTGCAGTACTACTGTGCCCTCAATGCGCTGCAGTACAGA
AAGCGCGTGGCCATGATGGAGCCCCTGCTAGGCTTCGCTCACGGACAGGTAAGGTGGTCC
TTTCCCCTGAGGCATCAGATCTAAGCCAGCTGTGGAGGACAGCATGGCATTTGCCAACTG
AACAAGCATCACCAGAGAAGGAAATTCAGGTGCACAAGCTCCCTGGAAACGTCTGAGATT
CAGCCCTCGGAGAGCTTCCAGAGGGGCTGGATCACTGTTAGCTGGACTTGTTAGGTTGTA
CGTGCAGGAAATGATGGCCTTGATCCCAAGACTCCTGTGGGGAGGAGCTGGTGTGGCCCT
TTGTATCTGATTCAGATGAAGGCCAGGCCTGGTCCAGGTTTGTGGCAAGCACCTGGCTCC
CAGGTTGGTGGAGCTAGGCTTGCAACCTAGGACTGCACGCCTTCCTCTGCTGTTCTGTGC
TCAGCCGGGCTCTTCTCAAAGATGTTTCCAGGGTTATTGCTGGCATCGTGGAACCTGGGG
TGTGGGGAGATGTTGCCACTGCCCGATAAAGTCTCTGTAGAATATTTCTCTGACTTCCTC
CTCCCATTTCTTGTACTACTGAGCATTTGTCTGCTGGGAGTCTCCAGTTTTGGGATAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAGAACCTTATCTGGTTGTTATTATATTTGTCACAAAAATGGTTCTAATGAATAAACA
AACATATTTTGAAGTTGCATGCTCTTAGAGAATTGCCACATACTTTGGACAGCTTGCCGT
TTTCCCTTCCCCCTTAACCAGGTAAAGACTGAAGTCGTAAAAGAGGTGGCAGCTGCGCGG
CGGAAACAGCACCTTTCATCCCTGCAGTACTACTGTGCCCTCAATGCGCTGCAGTACAGA
AAGCGCGTGGCCATGATGGAGCCCCTGCTAGGCTTCGCTCACGGACAGGTAAGGTGGTCC
TTTCCCCTGAGGCATCAGATCTAAGCCAGCTGTGGAGGACAGCATGGCATTTGCCAACTG
AACAAGCATCACCAGAGAAGGAAATTCAGGTGCACAAGCTCCCTGGAAACGTCTGAGATT
CAGCCCTCGGAGAGCTTCCAGAGGGGCTGGATCACTGTTAGCTGGACTTGTTAGGTTGTA
CGTGCAGGAAATGATGGCCTTGATCCCAAGACTCCTGTGGGGAGGAGCTGGTGTGGCCCT
TTGTATCTGATTCAGATGAAGGCCAGGCCTGGTCCAGGTTTGTGGCAAGCACCTGGCTCC
CAGGTTGGTGGAGCTAGGCTTGCAACCTAGGACTGCACGCCTTCCTCTGCTGTTCTGTGC
TCAGCCGGGCTCTTCTCAAAGATGTTTCCAGGGTTATTGCTGGCATCGTGGAACCTGGGG
TGTGGGGAGATGTTGCCACTGCCCGATAAAGTCTCTGTAGAATATTTCTCTGACTTCCTC
CTCCCATTTCTTGTACTACTGAGCATTTGTCTGCTGGGAGTCTCCAGTTTTGGGATAGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               246-363, - strand, RNAz p=0.689186
               

               
               428-596, + strand, RNAz p=0.622438

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               246-363, - strand, RNAz p=0.689186
               

               
               428-596, + strand, RNAz p=0.622438

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               21-840, gnl|bosTau2|chr2 (80763663-80762827)
               

               
               21-840, gnl|Hg17|chr12 (104103582-104102737)
               

               
               21-840, gnl|Mm7|chr10 (83162481-83161659)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-840, gnl|bosTau2|chr2 (80763663-80762827)
               

               
               21-840, gnl|Hg17|chr12 (104103582-104102737)
               

               
               21-840, gnl|Mm7|chr10 (83162481-83161659)

	246-363, - strand, RNAz p=0.689186
	428-596, + strand, RNAz p=0.622438

	21-840, gnl\|bosTau2\|chr2 (80763663-80762827)
	21-840, gnl\|Hg17\|chr12 (104103582-104102737)
	21-840, gnl\|Mm7\|chr10 (83162481-83161659)