Non-Coding RNA Search

Ss1.1-Thy1-THY010066B02.5

Sequence:


               
               AGAAGTTCTATGGCTTTCAGCCATTTTCCCATCCCTTTCATGAACTCTCGCTTTCTCACA
TGAGCCCTCTGAACAGAGCAGATCTGGGGAGGCCCAGGAGCTGCCCCTCTCTGCCTGCAG
TCACACCACCTTTAGTGTCTGTCTTTGAGGGAGGGGTGTGTGTTGGGGGTGGGGTGTTAG
TGCCGGGAGTCGAGCGGGGCCGATCCGCGGTCGGTCGGTCGCAGGTAAAGCGGGATGTGA
CGGTCAGAACTAGGTAGACCTCCAGGCTGCTCTTCTCCACGCCCACCTCCCTCCCTCTCC
GGGAATAGGGTGAGGTGTGGTGGCAGCCTTGGCACAGGCCCCCGCCCCCGGAGCTGCCTT
CTCTGTTGAGAACAGGTTGTACTCTTGAGAAACCACAAGAGGAAGTTTAGGGAGCGCTGG
GGGTGGGGAAAGTTCTGGGGCCCCTGCCAAGTTTCCCTTTCTCTGCTGAGTGGTAGGTGT
GTTTATTTTGGTGTGTTTCTCTTGCCCTCAAAGACATTTAAATTTTAAACCCACTGAGTT
TCACAGAGCTGTCAAGGCCTGTTCCGTTACAGTGTGTTTGTCTTGGAGGGGGTGAGAGTA
GTCAGAGACACCCCTGGAAATGGCTTTGCAACAAGGTACTCAGTTTTTGGATTTCACCTC
GGATTTGTGCTGGTTAGGAAAGGCCAGCTAACTTCACAAAGTCTTTTCTCGTCTCTGCCC
TTTCACCTCCCTCTTCCCCAAAGCACTCCCTACAGCCTCAAACACTGGACAGTGTGGTTA
TAATGGCCACTTGGGAGCCAAATGATGTTGCCAGGAGCTGTCCTATGTGTTCCACCTGCC
TTATCGCCTTTAATATTCACCATAACTCCAGGTAGT------------------------
------------------------------------------------------------
------------------------------------AGAGCCTGAGCTCTTGAGGTCTAT
TTAACCCTCAAATCAGAGCATCAACGTCTTCAGCATACCAAACCCCACACAATAGGAGGT
TGAGATCTAAAGATGTTTTTAAATGGTGCTGCTAGTGTTGGGAGGGGGCGACTTGGGTAT
AGAATTGGAAGAGAGATTCTCTGNAAGTTAATATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGTTCTATGGCTTTCAGCCATTTTCCCATCCCTTTCATGAACTCTCGCTTTCTCACA
TGAGCCCTCTGAACAGAGCAGATCTGGGGAGGCCCAGGAGCTGCCCCTCTCTGCCTGCAG
TCACACCACCTTTAGTGTCTGTCTTTGAGGGAGGGGTGTGTGTTGGGGGTGGGGTGTTAG
TGCCGGGAGTCGAGCGGGGCCGATCCGCGGTCGGTCGGTCGCAGGTAAAGCGGGATGTGA
CGGTCAGAACTAGGTAGACCTCCAGGCTGCTCTTCTCCACGCCCACCTCCCTCCCTCTCC
GGGAATAGGGTGAGGTGTGGTGGCAGCCTTGGCACAGGCCCCCGCCCCCGGAGCTGCCTT
CTCTGTTGAGAACAGGTTGTACTCTTGAGAAACCACAAGAGGAAGTTTAGGGAGCGCTGG
GGGTGGGGAAAGTTCTGGGGCCCCTGCCAAGTTTCCCTTTCTCTGCTGAGTGGTAGGTGT
GTTTATTTTGGTGTGTTTCTCTTGCCCTCAAAGACATTTAAATTTTAAACCCACTGAGTT
TCACAGAGCTGTCAAGGCCTGTTCCGTTACAGTGTGTTTGTCTTGGAGGGGGTGAGAGTA
GTCAGAGACACCCCTGGAAATGGCTTTGCAACAAGGTACTCAGTTTTTGGATTTCACCTC
GGATTTGTGCTGGTTAGGAAAGGCCAGCTAACTTCACAAAGTCTTTTCTCGTCTCTGCCC
TTTCACCTCCCTCTTCCCCAAAGCACTCCCTACAGCCTCAAACACTGGACAGTGTGGTTA
TAATGGCCACTTGGGAGCCAAATGATGTTGCCAGGAGCTGTCCTATGTGTTCCACCTGCC
TTATCGCCTTTAATATTCACCATAACTCCAGGTAGT------------------------
------------------------------------------------------------
------------------------------------AGAGCCTGAGCTCTTGAGGTCTAT
TTAACCCTCAAATCAGAGCATCAACGTCTTCAGCATACCAAACCCCACACAATAGGAGGT
TGAGATCTAAAGATGTTTTTAAATGGTGCTGCTAGTGTTGGGAGGGGGCGACTTGGGTAT
AGAATTGGAAGAGAGATTCTCTGNAAGTTAATATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               334-489, - strand, RNAz p=0.866111

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               334-489, - strand, RNAz p=0.866111

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               272-346, + strand, RNAmicro p=0.999685

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               272-346, + strand, RNAmicro p=0.999685

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               150-877, gnl|bosTau2|chr23 (13435002-13435721)
               

               
               150-877, gnl|Hg17|chr6 (42121825-42121121)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-877, gnl|bosTau2|chr23 (13435002-13435721)
               

               
               150-877, gnl|Hg17|chr6 (42121825-42121121)

	150-877, gnl\|bosTau2\|chr23 (13435002-13435721)
	150-877, gnl\|Hg17\|chr6 (42121825-42121121)