Non-Coding RNA Search

Ss1.1-Thy1-THY010066C11.5

Sequence:


               
               TGGAGTGTTTTCGGGGAGATAGCTGCTTCCCCTGCGGCCTCAAGCGTCTGACCACTGTTC
TTCCGGATTCAGCAATGGCTCATGAAGCAATGGAATATGAGCTTCAGGTGCAGTTAGATC
ATCATGCTGCAGAACAGTCTGCTCCTGCCGAGGTGGTCAGCAGCCAGGGGGGACCACTCC
TGCCTCAGCTTCCTCCTGACCAAGTGGTCAGCAGCCAAGAGGGACCACCCGTATTTCCGC
CTGCACCTGCTGACGTGGTCAGCAGCCAAGGGGGACCACCCCTGCTCCAGCCTCCTCCTG
ATGAAGTGGTCAGCAGCCAAGGGGGGCTGCCCTCGCTTCAACCTGCTCTGCAGGTGTCCG
CTGACGTGACAGAAGAGGTGGCGCTCTCAGGAGAAGAGAGTGTGGAGAACATCCGTCCGG
CGGCTTCAGAGGAGCACAGGCGGGGCTCTGGCGCTCCCCATACTGCCCAGGTGTCTTCAT
TGGACTCAATGAACACCTTCATCAGCGGGCTGCAGAGACTTCATGGCATGCTGGAATTCC
TGAGGCCACATTCAGACCACAGCGTGGGGCCAGTGAGGGCGAGGAGGAGGAGGAGTTCGG
CTTCACACAGGGCAAGAGCCGGAGGGTCTCAGAGGACGAGCGGTGGCAGGTCGAGAGCAC
CACTGGATGCTTACTTTCAAGTGAGCAGGACGCAGCCTCATTTGCCAGAAACCTCTTACG
ACTCAGAGACTAGGAATCCTGCCTCTGAAGACTTGCAGGTATCAGATAGTTCCGATTCTG
ACAGTGACAGCTCCACAGAGCATGAAGAGGGGGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGTGTTTTCGGGGAGATAGCTGCTTCCCCTGCGGCCTCAAGCGTCTGACCACTGTTC
TTCCGGATTCAGCAATGGCTCATGAAGCAATGGAATATGAGCTTCAGGTGCAGTTAGATC
ATCATGCTGCAGAACAGTCTGCTCCTGCCGAGGTGGTCAGCAGCCAGGGGGGACCACTCC
TGCCTCAGCTTCCTCCTGACCAAGTGGTCAGCAGCCAAGAGGGACCACCCGTATTTCCGC
CTGCACCTGCTGACGTGGTCAGCAGCCAAGGGGGACCACCCCTGCTCCAGCCTCCTCCTG
ATGAAGTGGTCAGCAGCCAAGGGGGGCTGCCCTCGCTTCAACCTGCTCTGCAGGTGTCCG
CTGACGTGACAGAAGAGGTGGCGCTCTCAGGAGAAGAGAGTGTGGAGAACATCCGTCCGG
CGGCTTCAGAGGAGCACAGGCGGGGCTCTGGCGCTCCCCATACTGCCCAGGTGTCTTCAT
TGGACTCAATGAACACCTTCATCAGCGGGCTGCAGAGACTTCATGGCATGCTGGAATTCC
TGAGGCCACATTCAGACCACAGCGTGGGGCCAGTGAGGGCGAGGAGGAGGAGGAGTTCGG
CTTCACACAGGGCAAGAGCCGGAGGGTCTCAGAGGACGAGCGGTGGCAGGTCGAGAGCAC
CACTGGATGCTTACTTTCAAGTGAGCAGGACGCAGCCTCATTTGCCAGAAACCTCTTACG
ACTCAGAGACTAGGAATCCTGCCTCTGAAGACTTGCAGGTATCAGATAGTTCCGATTCTG
ACAGTGACAGCTCCACAGAGCATGAAGAGGGGGTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               698-816, - strand, RNAz p=0.598586

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               698-816, - strand, RNAz p=0.598586

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               648-816, gnl|bosTau2|chr18 (975779-975611)
               

               
               648-816, gnl|canFam2|chr5 (78976285-78976034)
               

               
               648-816, gnl|dasNov1|scaffold_42458 (5561-5314)
               

               
               648-816, gnl|echTel1|scaffold_253477 (7698-7452)
               

               
               648-816, gnl|galGal2|chr11 (1791207-1791468)
               

               
               648-816, gnl|hg17|chr16 (73243309-73243558)
               

               
               648-816, gnl|Hg17|chr16 (73243523-73243355)
               

               
               648-816, gnl|mm7|chr8 (109894029-109894257)
               

               
               648-816, gnl|Mm7|chr8 (109894222-109894069)
               

               
               648-816, gnl|monDom2|scaffold_63 (10198262-10198531)
               

               
               648-816, gnl|oryCun1|scaffold_133540 (4266-4017)
               

               
               648-816, gnl|panTro1|chr18 (67632219-67632468)
               

               
               648-816, gnl|rn3|chr19 (41220863-41221076)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               648-816, gnl|bosTau2|chr18 (975779-975611)
               

               
               648-816, gnl|canFam2|chr5 (78976285-78976034)
               

               
               648-816, gnl|dasNov1|scaffold_42458 (5561-5314)
               

               
               648-816, gnl|echTel1|scaffold_253477 (7698-7452)
               

               
               648-816, gnl|galGal2|chr11 (1791207-1791468)
               

               
               648-816, gnl|hg17|chr16 (73243309-73243558)
               

               
               648-816, gnl|Hg17|chr16 (73243523-73243355)
               

               
               648-816, gnl|mm7|chr8 (109894029-109894257)
               

               
               648-816, gnl|Mm7|chr8 (109894222-109894069)
               

               
               648-816, gnl|monDom2|scaffold_63 (10198262-10198531)
               

               
               648-816, gnl|oryCun1|scaffold_133540 (4266-4017)
               

               
               648-816, gnl|panTro1|chr18 (67632219-67632468)
               

               
               648-816, gnl|rn3|chr19 (41220863-41221076)

	648-816, gnl\|bosTau2\|chr18 (975779-975611)
	648-816, gnl\|canFam2\|chr5 (78976285-78976034)
	648-816, gnl\|dasNov1\|scaffold_42458 (5561-5314)
	648-816, gnl\|echTel1\|scaffold_253477 (7698-7452)
	648-816, gnl\|galGal2\|chr11 (1791207-1791468)
	648-816, gnl\|hg17\|chr16 (73243309-73243558)
	648-816, gnl\|Hg17\|chr16 (73243523-73243355)
	648-816, gnl\|mm7\|chr8 (109894029-109894257)
	648-816, gnl\|Mm7\|chr8 (109894222-109894069)
	648-816, gnl\|monDom2\|scaffold_63 (10198262-10198531)
	648-816, gnl\|oryCun1\|scaffold_133540 (4266-4017)
	648-816, gnl\|panTro1\|chr18 (67632219-67632468)
	648-816, gnl\|rn3\|chr19 (41220863-41221076)