Ss1.1-Thy1-THY010070C10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCCCAACAATGGCGGCTCCGAGCCCGAGCGGCGGCGGCGGCTCCGGGGGCGGCAGCAG CAGCAGCGGCACCCCGGGGCCCGTGGGGTCCCCGGCGCCCGGCCACCCGGCCGTCAGCAG CATGCAGGGTAAACGCAAAGCACTGAAGTTGAATTTTGCAAATCCACCTTTCAAATCTAC AGCAAGGTTTACTCTGAATCCCAATCCTGCAGGTTCAAAACCCGCACATAGAGAGACTGA GAACACACAGCATTGAATCGTCAGGAAAACTGAAGAACTCCCAACAATGGCGGCTCCGAG CCCGAGCGGCGGCGGCGGCTCCGGGGGCGGCAGCAGGACGAGGAGCTTATGGTTCTGTCA ACAAAATGGTCCACAAACCAAGTGGGCAAATAATGGCAGTTAAAAGAATTCGGTCAACAG TGGATGAAAAAGAGCAAAAGCAGCTTCTGATGGATCTGGACGTGGTGATGAGGAGCAGCG ACTGCCCGTACATTGTTCAGTTTTACGGCGCACTCTTCAGAGAGGGTGACTGTTGGATCT GTATGGAACTCATGTCTACCTCGTTTGATAAGTTTTACAAATATGTATATAGTGTATTAG ATGATGTTATTCCAGAAGAAATTTTAGGCAAAATCACTTTAGCAACTGTGAAAGCACTAA ACCACTTAAAAGAAAACTTGAAAATCATTCACAGAGATATCAAACCTTCCAATATTCTTC TGGACAGAAGTGGAAATATTAAACTCTGTGACTTTGGCATCAGTGGACAGCTTGTGGACT CCATTGCCAAGACCAGAGATGCTGGGTGTAGGCCGTACATGGCACCTGAAAGAATAGACC CGAGTGCATCACGACAAGGATACGATGTCCGCTCGGATGTCTGGAGTTTGGGGATCACAC TGTACGAACTGGCCACGGGCCGATTTCCTTATCCAAAGTGGAATAGTGTATTTGATCAAC TAACACAAGTCGTGAAAGGAGATCCGCCGCAGCTGAGTAATTCTGAGGAAAGGGAATTCT CCCCAAGTTTCATCAACTTTGTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCCCAACAATGGCGGCTCCGAGCCCGAGCGGCGGCGGCGGCTCCGGGGGCGGCAGCAG CAGCAGCGGCACCCCGGGGCCCGTGGGGTCCCCGGCGCCCGGCCACCCGGCCGTCAGCAG CATGCAGGGTAAACGCAAAGCACTGAAGTTGAATTTTGCAAATCCACCTTTCAAATCTAC AGCAAGGTTTACTCTGAATCCCAATCCTGCAGGTTCAAAACCCGCACATAGAGAGACTGA GAACACACAGCATTGAATCGTCAGGAAAACTGAAGAACTCCCAACAATGGCGGCTCCGAG CCCGAGCGGCGGCGGCGGCTCCGGGGGCGGCAGCAGGACGAGGAGCTTATGGTTCTGTCA ACAAAATGGTCCACAAACCAAGTGGGCAAATAATGGCAGTTAAAAGAATTCGGTCAACAG TGGATGAAAAAGAGCAAAAGCAGCTTCTGATGGATCTGGACGTGGTGATGAGGAGCAGCG ACTGCCCGTACATTGTTCAGTTTTACGGCGCACTCTTCAGAGAGGGTGACTGTTGGATCT GTATGGAACTCATGTCTACCTCGTTTGATAAGTTTTACAAATATGTATATAGTGTATTAG ATGATGTTATTCCAGAAGAAATTTTAGGCAAAATCACTTTAGCAACTGTGAAAGCACTAA ACCACTTAAAAGAAAACTTGAAAATCATTCACAGAGATATCAAACCTTCCAATATTCTTC TGGACAGAAGTGGAAATATTAAACTCTGTGACTTTGGCATCAGTGGACAGCTTGTGGACT CCATTGCCAAGACCAGAGATGCTGGGTGTAGGCCGTACATGGCACCTGAAAGAATAGACC CGAGTGCATCACGACAAGGATACGATGTCCGCTCGGATGTCTGGAGTTTGGGGATCACAC TGTACGAACTGGCCACGGGCCGATTTCCTTATCCAAAGTGGAATAGTGTATTTGATCAAC TAACACAAGTCGTGAAAGGAGATCCGCCGCAGCTGAGTAATTCTGAGGAAAGGGAATTCT CCCCAAGTTTCATCAACTTTGTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 929-1044, - strand, RNAz p=0.738224 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 929-1044, - strand, RNAz p=0.738224 |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 1-132, gnl|bosTau2|chr19 (24766438-24766572) | |
| 1-132, gnl|hg17|chr17 (11864869-11865055) | |
| 1-132, gnl|Hg17|chr17 (11864919-11865047) | |
| 1-132, gnl|mm7|chr11 (65869872-65869692) | |
| 1-132, gnl|Mm7|chr11 (65869820-65869698) | |
| 1-132, gnl|monDom2|scaffold_88 (5132962-5132794) | |
| 1-132, gnl|oryCun1|scaffold_121643 (7015-6862) | |
| 1-132, gnl|panTro1|chr19_random (26499917-26499731) | |
| 1-132, gnl|rheMac2|chr16 (11769618-11769804) | |
| 1-132, gnl|rn3|chr10 (52580961-52581141) | |
| 400-525, gnl|bosTau2|chr19 (24822730-24822855) | |
| 400-525, gnl|canFam2|chr5 (39184713-39184864) | |
| 400-525, gnl|canFam2|chr5 (39184847-39184739) | |
| 400-525, gnl|danRer3|chrNA (141234464-141234310) | |
| 400-525, gnl|danRer3|chrNA (141234322-141234437) | |
| 400-525, gnl|dasNov1|scaffold_8690 (47633-47481) | |
| 400-525, gnl|echTel1|scaffold_97507 (1332-1181) | |
| 400-525, gnl|echTel1|scaffold_97507 (1193-1306) | |
| 400-525, gnl|fr1|chrUn (249399913-249400065) | |
| 400-525, gnl|fr1|chrUn (249400053-249399938) | |
| 400-525, gnl|galGal2|chr18 (706257-706409) | |
| 400-525, gnl|galGal2|chr18 (706400-706287) | |
| 400-525, gnl|hg17|chr17 (11939594-11939745) | |
| 400-525, gnl|Hg17|chr17 (11939612-11939737) | |
| 400-525, gnl|hg17|chrX (72528505-72528620) | |
| 400-525, gnl|loxAfr1|scaffold_843 (114546-114683) | |
| 400-525, gnl|loxAfr1|scaffold_843 (114674-114561) | |
| 400-525, gnl|mm7|chr11 (65801194-65801043) | |
| 400-525, gnl|Mm7|chr11 (65801174-65801049) | |
| 400-525, gnl|mm7|chr8 (4208331-4208223) | |
| 400-525, gnl|monDom2|scaffold_27 (24792481-24792368) | |
| 400-525, gnl|monDom2|scaffold_88 (4977879-4977723) | |
| 400-525, gnl|oryCun1|scaffold_173539 (45854-45751) | |
| 400-525, gnl|oryCun1|scaffold_201367 (2513-2362) | |
| 400-525, gnl|panTro1|chr19_random (26424995-26424844) | |
| 400-525, gnl|panTro1|chrX_random (68316552-68316437) | |
| 400-525, gnl|rheMac2|chr16 (11842857-11843008) | |
| 400-525, gnl|rheMac2|chrX (72623372-72623472) | |
| 400-525, gnl|rn3|chr10 (52055247-52055096) | |
| 400-525, gnl|rn3|chr12 (1547171-1547279) | |
| 400-525, gnl|tetNig1|chrUn_random (23319152-23319276) | |
| 400-525, gnl|tetNig1|chrUn_random (23319270-23319155) | |
| 400-525, gnl|xenTro1|scaffold_135 (271928-271789) | |
| 609-790, gnl|bosTau2|chr17 (17289897-17289716) | |
| 609-790, gnl|Hg17|chr8 (30005256-30005439) | |
| 609-790, gnl|Mm7|chr9 (64233290-64221876) | |
| 902-1044, gnl|bosTau2|chr19 (24838326-24838468) | |
| 902-1044, gnl|canFam2|chr5 (39222784-39222954) | |
| 902-1044, gnl|danRer3|chrNA (141232322-141232156) | |
| 902-1044, gnl|dasNov1|scaffold_9210 (5638-5808) | |
| 902-1044, gnl|echTel1|scaffold_288353 (114084-114254) | |
| 902-1044, gnl|fr1|chrUn (249400990-249401148) | |
| 902-1044, gnl|galGal2|chr18 (733933-734100) | |
| 902-1044, gnl|hg17|chr17 (11973168-11973338) | |
| 902-1044, gnl|Hg17|chr17 (11973180-11973322) | |
| 902-1044, gnl|loxAfr1|scaffold_14107 (26977-26807) | |
| 902-1044, gnl|mm7|chr11 (65775151-65774981) | |
| 902-1044, gnl|Mm7|chr11 (65775137-65774995) | |
| 902-1044, gnl|monDom2|scaffold_88 (4908288-4908118) | |
| 902-1044, gnl|oryCun1|scaffold_163909 (6083-5913) | |
| 902-1044, gnl|panTro1|chr19_random (26391359-26391189) | |
| 902-1044, gnl|rheMac2|chr16 (11877027-11877197) | |
| 902-1044, gnl|rn3|chr10 (52025628-52025458) | |
| 902-1044, gnl|tetNig1|chrUn_random (23320796-23320957) | |
| 902-1044, gnl|xenTro1|scaffold_20119 (609-779) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-132, gnl|bosTau2|chr19 (24766438-24766572) | |
| 1-132, gnl|hg17|chr17 (11864869-11865055) | |
| 1-132, gnl|Hg17|chr17 (11864919-11865047) | |
| 1-132, gnl|mm7|chr11 (65869872-65869692) | |
| 1-132, gnl|Mm7|chr11 (65869820-65869698) | |
| 1-132, gnl|monDom2|scaffold_88 (5132962-5132794) | |
| 1-132, gnl|oryCun1|scaffold_121643 (7015-6862) | |
| 1-132, gnl|panTro1|chr19_random (26499917-26499731) | |
| 1-132, gnl|rheMac2|chr16 (11769618-11769804) | |
| 1-132, gnl|rn3|chr10 (52580961-52581141) | |
| 400-525, gnl|bosTau2|chr19 (24822730-24822855) | |
| 400-525, gnl|canFam2|chr5 (39184713-39184864) | |
| 400-525, gnl|canFam2|chr5 (39184847-39184739) | |
| 400-525, gnl|danRer3|chrNA (141234464-141234310) | |
| 400-525, gnl|danRer3|chrNA (141234322-141234437) | |
| 400-525, gnl|dasNov1|scaffold_8690 (47633-47481) | |
| 400-525, gnl|echTel1|scaffold_97507 (1332-1181) | |
| 400-525, gnl|echTel1|scaffold_97507 (1193-1306) | |
| 400-525, gnl|fr1|chrUn (249399913-249400065) | |
| 400-525, gnl|fr1|chrUn (249400053-249399938) | |
| 400-525, gnl|galGal2|chr18 (706257-706409) | |
| 400-525, gnl|galGal2|chr18 (706400-706287) | |
| 400-525, gnl|hg17|chr17 (11939594-11939745) | |
| 400-525, gnl|Hg17|chr17 (11939612-11939737) | |
| 400-525, gnl|hg17|chrX (72528505-72528620) | |
| 400-525, gnl|loxAfr1|scaffold_843 (114546-114683) | |
| 400-525, gnl|loxAfr1|scaffold_843 (114674-114561) | |
| 400-525, gnl|mm7|chr11 (65801194-65801043) | |
| 400-525, gnl|Mm7|chr11 (65801174-65801049) | |
| 400-525, gnl|mm7|chr8 (4208331-4208223) | |
| 400-525, gnl|monDom2|scaffold_27 (24792481-24792368) | |
| 400-525, gnl|monDom2|scaffold_88 (4977879-4977723) | |
| 400-525, gnl|oryCun1|scaffold_173539 (45854-45751) | |
| 400-525, gnl|oryCun1|scaffold_201367 (2513-2362) | |
| 400-525, gnl|panTro1|chr19_random (26424995-26424844) | |
| 400-525, gnl|panTro1|chrX_random (68316552-68316437) | |
| 400-525, gnl|rheMac2|chr16 (11842857-11843008) | |
| 400-525, gnl|rheMac2|chrX (72623372-72623472) | |
| 400-525, gnl|rn3|chr10 (52055247-52055096) | |
| 400-525, gnl|rn3|chr12 (1547171-1547279) | |
| 400-525, gnl|tetNig1|chrUn_random (23319152-23319276) | |
| 400-525, gnl|tetNig1|chrUn_random (23319270-23319155) | |
| 400-525, gnl|xenTro1|scaffold_135 (271928-271789) | |
| 609-790, gnl|bosTau2|chr17 (17289897-17289716) | |
| 609-790, gnl|Hg17|chr8 (30005256-30005439) | |
| 609-790, gnl|Mm7|chr9 (64233290-64221876) | |
| 902-1044, gnl|bosTau2|chr19 (24838326-24838468) | |
| 902-1044, gnl|canFam2|chr5 (39222784-39222954) | |
| 902-1044, gnl|danRer3|chrNA (141232322-141232156) | |
| 902-1044, gnl|dasNov1|scaffold_9210 (5638-5808) | |
| 902-1044, gnl|echTel1|scaffold_288353 (114084-114254) | |
| 902-1044, gnl|fr1|chrUn (249400990-249401148) | |
| 902-1044, gnl|galGal2|chr18 (733933-734100) | |
| 902-1044, gnl|hg17|chr17 (11973168-11973338) | |
| 902-1044, gnl|Hg17|chr17 (11973180-11973322) | |
| 902-1044, gnl|loxAfr1|scaffold_14107 (26977-26807) | |
| 902-1044, gnl|mm7|chr11 (65775151-65774981) | |
| 902-1044, gnl|Mm7|chr11 (65775137-65774995) | |
| 902-1044, gnl|monDom2|scaffold_88 (4908288-4908118) | |
| 902-1044, gnl|oryCun1|scaffold_163909 (6083-5913) | |
| 902-1044, gnl|panTro1|chr19_random (26391359-26391189) | |
| 902-1044, gnl|rheMac2|chr16 (11877027-11877197) | |
| 902-1044, gnl|rn3|chr10 (52025628-52025458) | |
| 902-1044, gnl|tetNig1|chrUn_random (23320796-23320957) | |
| 902-1044, gnl|xenTro1|scaffold_20119 (609-779) |