Non-Coding RNA Search

Ss1.1-Thy1-THY010071E10.5

Sequence:


               
               TTTTTTGGTTCCTGGTTGGTGCTTCCTGGTCGCAGCCGCGGCACCTCGAGATTACTGACC
TTCCATGATGTTTGGTGGTTTCTGAAACTATAGAAGCATATGAAGATGACCTTTATCGTG
AAGAGTCATCTAGTGAACTAAGTGTCGATAGTGAGGTGGAATTTCAGCTCTACAGTCAAG
TTCATTATGCCCAAGATCTTGATAATGTCATCAGGGAGGAGGAACATGAAGAGAATAACT
CTGGGAATTCTGAATCATTTGGTAGTAAACCAAATCAGAAGAACTTAATTATCCTTTCAG
ATAGTGAGGTCATCCAGCTATCAGATGGGTCAGAGGTCATCACTCTGTCTGATAAAGATA
GTATTTATAAATGTAAAAGAAAGAATTTTAGAGACCAGGCAAAAGAAAAGACCCAAGGTC
CTCCTGCTTCTCTTCATTCTAATGAGCTGGCAGATCAGAAATGCAAGAGGGATGTTGAGA
AGCCTCAACCTGGAGAGAGATCGGGTGCAGTCCAAGAAGTCATGATTATAGAGGTCAGTT
CAAGTGAAGAGGAAGAGAGCACCATTTCAGAAAGTGATAACGTGGAAAGCTGGATGCTGC
TGGGATGCGAAGTTGATGATAAAGATGATGATATCCTTCTCAATCTTGTGGGATGTGAAA
AGTCTCTTAATGAAGGTTAGTATCATATTGGCCATTCCAACAAAAATGTTACCTGCAGAA
ATTGCAACAAATGTGGCCATTTGTCAAAAAACTGTCCTTTTCCACAAAAAGTCCGTCCCT
GCTGCCTCTGCTCCGAGAGAGGACATCTCCAGTATGCCTGTCCAGCCCGCTTTTGCTTAG
ACTGCTCTTTGCCCATGTCTTCAGCGCACAGATGTCTCGAAAGACCTTCTTGGAGAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTGGTTCCTGGTTGGTGCTTCCTGGTCGCAGCCGCGGCACCTCGAGATTACTGACC
TTCCATGATGTTTGGTGGTTTCTGAAACTATAGAAGCATATGAAGATGACCTTTATCGTG
AAGAGTCATCTAGTGAACTAAGTGTCGATAGTGAGGTGGAATTTCAGCTCTACAGTCAAG
TTCATTATGCCCAAGATCTTGATAATGTCATCAGGGAGGAGGAACATGAAGAGAATAACT
CTGGGAATTCTGAATCATTTGGTAGTAAACCAAATCAGAAGAACTTAATTATCCTTTCAG
ATAGTGAGGTCATCCAGCTATCAGATGGGTCAGAGGTCATCACTCTGTCTGATAAAGATA
GTATTTATAAATGTAAAAGAAAGAATTTTAGAGACCAGGCAAAAGAAAAGACCCAAGGTC
CTCCTGCTTCTCTTCATTCTAATGAGCTGGCAGATCAGAAATGCAAGAGGGATGTTGAGA
AGCCTCAACCTGGAGAGAGATCGGGTGCAGTCCAAGAAGTCATGATTATAGAGGTCAGTT
CAAGTGAAGAGGAAGAGAGCACCATTTCAGAAAGTGATAACGTGGAAAGCTGGATGCTGC
TGGGATGCGAAGTTGATGATAAAGATGATGATATCCTTCTCAATCTTGTGGGATGTGAAA
AGTCTCTTAATGAAGGTTAGTATCATATTGGCCATTCCAACAAAAATGTTACCTGCAGAA
ATTGCAACAAATGTGGCCATTTGTCAAAAAACTGTCCTTTTCCACAAAAAGTCCGTCCCT
GCTGCCTCTGCTCCGAGAGAGGACATCTCCAGTATGCCTGTCCAGCCCGCTTTTGCTTAG
ACTGCTCTTTGCCCATGTCTTCAGCGCACAGATGTCTCGAAAGACCTTCTTGGAGAAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57094125|ref|XP_538733.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57094125|ref|XP_538733.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               52-696, gnl|bosTau2|chr2 (56521513-56522156)
               

               
               52-696, gnl|Hg17|chr9 (37116318-37116960)
               

               
               52-696, gnl|Mm7|chr4 (44775673-44776310)
               


               
               758-900, gnl|bosTau2|chr8 (30237749-30237605)
               

               
               758-900, gnl|Hg17|chr9 (37295530-37295673)
               

               
               758-900, gnl|Mm7|chr4 (44909621-44909765)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-696, gnl|bosTau2|chr2 (56521513-56522156)
               

               
               52-696, gnl|Hg17|chr9 (37116318-37116960)
               

               
               52-696, gnl|Mm7|chr4 (44775673-44776310)
               


               
               758-900, gnl|bosTau2|chr8 (30237749-30237605)
               

               
               758-900, gnl|Hg17|chr9 (37295530-37295673)
               

               
               758-900, gnl|Mm7|chr4 (44909621-44909765)

	52-696, gnl\|bosTau2\|chr2 (56521513-56522156)
	52-696, gnl\|Hg17\|chr9 (37116318-37116960)
	52-696, gnl\|Mm7\|chr4 (44775673-44776310)

	758-900, gnl\|bosTau2\|chr8 (30237749-30237605)
	758-900, gnl\|Hg17\|chr9 (37295530-37295673)
	758-900, gnl\|Mm7\|chr4 (44909621-44909765)