Non-Coding RNA Search

Ss1.1-Thy1-THY010087C10.5

Sequence:


               
               GCCAGCAAGACTGCATGGGCCGCAGCCTCCTGGCGAAGAGATGCCACCTCCGCATGGCTG
TCGGACAGCGTTGCGTCCGATGCCTGCAGCCTCCGCTCCTGCTCCTCCAGCCGGGTGGCC
AGCCCCCTCCGCTCCTCCTGCAGCCCCAGATGCTCTCTGTGAAGCACTTGCACCAAGCCC
TCCTGCGTGCCCAGCCGCTCCTCCAGCTCCAGAACCTGGGCACTCAGCCTCCCCAGCTCC
TGCTGGCCCTGCTCAGCCTGGACCCGAACCCGGGCCAACTCCTCTTCCAGTGTCCGGCGC
TCTGCGCCCAGGGTCGAGGCCTGCTGCTGGGCCTCCCTAAGCTGGTCCCGCAGCTGTTGG
TTCTCCTGATCCAAAATCTGATTCCTCTCACGGCAGCATTTCAGCTCTGCCATTCGGTCA
CATAACTGACCCTTTAAGTCCCAGGCCGGACGTTTGCTGGGCTTCTTCCCTCCCACCATG
GGAGGGGCAGCTGTGCCAGGCTTCTGGGCAGGAACAGCAGGGCCTGGCTTCTGATTCTTC
AGCACTGTGGCAACAGCTGTGGGACAGCGGGGTCCTGTCTTCTTGGGAGCCGTGCGCGCT
GCAGCCTGGCCCTGCGTCTGAGGCACTGCGGTGAGCAACGCTGCTCTGGGGCGGGACGGG
GCGATTTTGGTGCCCAGGCCTCGCGTCCTTTTCTTCTCAGGTTCCAAGGCCTCCTCCATC
TGCTCAGGCCCCCTCTTAAGTCTGCTTCCTGACAAGGGCAGCCGGGAAGGGGGCTTGGGC
AGGGGTCTCTTTACCTCTATGTTCCCCTTCACTTCCGACAAGGGCGACCTCAGCGTCTCC
ATGTCTGCTCCGCGCCACGCACGCCCGGGAAGCTCGATGCAGGAGGACACGGCGCCGGGG
CTCCCGGGACCCGCTTTCGCGCGCGCTCGCCACACTGCACGCGCGCTCCGGGCACCCGCG
CCACAGCCCCGCGCCACACCCGCCACTTTCGAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGCAAGACTGCATGGGCCGCAGCCTCCTGGCGAAGAGATGCCACCTCCGCATGGCTG
TCGGACAGCGTTGCGTCCGATGCCTGCAGCCTCCGCTCCTGCTCCTCCAGCCGGGTGGCC
AGCCCCCTCCGCTCCTCCTGCAGCCCCAGATGCTCTCTGTGAAGCACTTGCACCAAGCCC
TCCTGCGTGCCCAGCCGCTCCTCCAGCTCCAGAACCTGGGCACTCAGCCTCCCCAGCTCC
TGCTGGCCCTGCTCAGCCTGGACCCGAACCCGGGCCAACTCCTCTTCCAGTGTCCGGCGC
TCTGCGCCCAGGGTCGAGGCCTGCTGCTGGGCCTCCCTAAGCTGGTCCCGCAGCTGTTGG
TTCTCCTGATCCAAAATCTGATTCCTCTCACGGCAGCATTTCAGCTCTGCCATTCGGTCA
CATAACTGACCCTTTAAGTCCCAGGCCGGACGTTTGCTGGGCTTCTTCCCTCCCACCATG
GGAGGGGCAGCTGTGCCAGGCTTCTGGGCAGGAACAGCAGGGCCTGGCTTCTGATTCTTC
AGCACTGTGGCAACAGCTGTGGGACAGCGGGGTCCTGTCTTCTTGGGAGCCGTGCGCGCT
GCAGCCTGGCCCTGCGTCTGAGGCACTGCGGTGAGCAACGCTGCTCTGGGGCGGGACGGG
GCGATTTTGGTGCCCAGGCCTCGCGTCCTTTTCTTCTCAGGTTCCAAGGCCTCCTCCATC
TGCTCAGGCCCCCTCTTAAGTCTGCTTCCTGACAAGGGCAGCCGGGAAGGGGGCTTGGGC
AGGGGTCTCTTTACCTCTATGTTCCCCTTCACTTCCGACAAGGGCGACCTCAGCGTCTCC
ATGTCTGCTCCGCGCCACGCACGCCCGGGAAGCTCGATGCAGGAGGACACGGCGCCGGGG
CTCCCGGGACCCGCTTTCGCGCGCGCTCGCCACACTGCACGCGCGCTCCGGGCACCCGCG
CCACAGCCCCGCGCCACACCCGCCACTTTCGAATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55626418|ref|XP_518406.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55626418|ref|XP_518406.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               159-358, - strand, RNAz p=0.842224
               

               
               674-827, - strand, RNAz p=0.870629

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-358, - strand, RNAz p=0.842224
               

               
               674-827, - strand, RNAz p=0.870629

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-971, gnl|bosTau2|chr1 (28456024-28455053)
               

               
               1-971, gnl|Hg17|chr6 (33480701-33473778)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-971, gnl|bosTau2|chr1 (28456024-28455053)
               

               
               1-971, gnl|Hg17|chr6 (33480701-33473778)

	159-358, - strand, RNAz p=0.842224
	674-827, - strand, RNAz p=0.870629

	1-971, gnl\|bosTau2\|chr1 (28456024-28455053)
	1-971, gnl\|Hg17\|chr6 (33480701-33473778)