Non-Coding RNA Search

Ss1.1-Thy1-THY010088H11.5

Sequence:


               
               AAACAGCCAATGAGGAGGAGGAAATTGTCCACAAACTCCTGGGGGACAAATTCAAGGGCC
AGCTGGAGCTTCTGCGGAGACTCTTCACAGAGGCGCTCTATGAGGAAGCACTCAGCCAGT
GGTTCACTCCAGATGGATTCCGGTCTCTCTTTGCTCTTGTTGGGACCAATGGCCAAGGAA
TTGGAACCAGCTCCCTGAGCCAGTGGGTCCACGCCTGTGACGCTCTGGAGCTGAAGCCTC
AGGACCGTGAGCAGCTGGACGCCTTCATCGATCAGCTGTACAAGGACATCGAGGCAGCAA
CTGGCGAGTTTCTTAACTGTGAAGGATCTGGCCTCTTTGCGCTACAGAGCTGCTGCAACC
ACAGCTGTGTCCCCAATGCAGAGACCTCCTTCCCAGAAAACAACTTCCTTTTGCACGTCA
CCGCCCTGGAGGATATTAAGCCAGGAGAGGAAATCTGCATCAGCTACTTGGACTGCTGTC
AGCGGGAGCGCAGCCGCCATAGCCGCCACAAGATCCTCAGGGAGAACTACCTGTTCGTCT
GTTCCTGCCCCAAATGCTTGGCAGAGGCTGATGAGCCCAACATGACCTCTGAGGAGGAGG
AGGATGAAGAGGAGGAGGAAGGGGAGCCGGAAGCTGCGGAGCTGGGGGATGAGATGACTG
ATGTGTGATGTCATCCTGCCGGAAGAGGGGGCCTTTCCCAAGAGCAGAGGCTTGGAAAGA
ACACCCCACTGCCGTTGCCTGCTTCCCCCCCTATTCCAGCTGTTTCTGCCTGTGGGTAGG
ACAGGTTGGACCCCAGGCCCCCCACCTGCCACAGACCTCACGCCTTGGACACTGCTGCTG
GGTAGCTCAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAGCCAATGAGGAGGAGGAAATTGTCCACAAACTCCTGGGGGACAAATTCAAGGGCC
AGCTGGAGCTTCTGCGGAGACTCTTCACAGAGGCGCTCTATGAGGAAGCACTCAGCCAGT
GGTTCACTCCAGATGGATTCCGGTCTCTCTTTGCTCTTGTTGGGACCAATGGCCAAGGAA
TTGGAACCAGCTCCCTGAGCCAGTGGGTCCACGCCTGTGACGCTCTGGAGCTGAAGCCTC
AGGACCGTGAGCAGCTGGACGCCTTCATCGATCAGCTGTACAAGGACATCGAGGCAGCAA
CTGGCGAGTTTCTTAACTGTGAAGGATCTGGCCTCTTTGCGCTACAGAGCTGCTGCAACC
ACAGCTGTGTCCCCAATGCAGAGACCTCCTTCCCAGAAAACAACTTCCTTTTGCACGTCA
CCGCCCTGGAGGATATTAAGCCAGGAGAGGAAATCTGCATCAGCTACTTGGACTGCTGTC
AGCGGGAGCGCAGCCGCCATAGCCGCCACAAGATCCTCAGGGAGAACTACCTGTTCGTCT
GTTCCTGCCCCAAATGCTTGGCAGAGGCTGATGAGCCCAACATGACCTCTGAGGAGGAGG
AGGATGAAGAGGAGGAGGAAGGGGAGCCGGAAGCTGCGGAGCTGGGGGATGAGATGACTG
ATGTGTGATGTCATCCTGCCGGAAGAGGGGGCCTTTCCCAAGAGCAGAGGCTTGGAAAGA
ACACCCCACTGCCGTTGCCTGCTTCCCCCCCTATTCCAGCTGTTTCTGCCTGTGGGTAGG
ACAGGTTGGACCCCAGGCCCCCCACCTGCCACAGACCTCACGCCTTGGACACTGCTGCTG
GGTAGCTCAGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6GMV2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6GMV2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               569-685, + strand, RNAz p=0.714854

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               569-685, + strand, RNAz p=0.714854

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006062, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006062, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               187-297, gnl|bosTau2|chr11 (8915490-8915600)
               

               
               187-297, gnl|Hg17|chr2 (73362204-73362315)
               

               
               187-297, gnl|Mm7|chr6 (85471754-85471862)
               


               
               518-685, gnl|bosTau2|chr11 (8917752-8917923)
               

               
               518-685, gnl|Hg17|chr2 (73364576-73364747)
               

               
               518-685, gnl|Mm7|chr6 (85474711-85474879)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-297, gnl|bosTau2|chr11 (8915490-8915600)
               

               
               187-297, gnl|Hg17|chr2 (73362204-73362315)
               

               
               187-297, gnl|Mm7|chr6 (85471754-85471862)
               


               
               518-685, gnl|bosTau2|chr11 (8917752-8917923)
               

               
               518-685, gnl|Hg17|chr2 (73364576-73364747)
               

               
               518-685, gnl|Mm7|chr6 (85474711-85474879)

	187-297, gnl\|bosTau2\|chr11 (8915490-8915600)
	187-297, gnl\|Hg17\|chr2 (73362204-73362315)
	187-297, gnl\|Mm7\|chr6 (85471754-85471862)

	518-685, gnl\|bosTau2\|chr11 (8917752-8917923)
	518-685, gnl\|Hg17\|chr2 (73364576-73364747)
	518-685, gnl\|Mm7\|chr6 (85474711-85474879)