Non-Coding RNA Search

Ss1.1-Thy1-THY010092A03.5

Sequence:


               
               ATACCTGCTCAGTAAGGCCTTTCCTGACTCTTCTATTTAACAATGTCCCCTGTACCTAGA
AGAGTGCGCTATTCATAGTAGATACTCGATAACTATTTGTGGAGTGAATTTATGAATAAA
TGAAGCCTCTTCTCTCTGGGCTTAGCACTGTGCTGAGCACACAGTAGATTCTTAATAAAT
AATTGTGTGAGTAGTCATCATCCTCTCCATTTGCCAGATAATACTTTGGTTGGGTCAACC
CTGAAGCCTTTTTGCCTCTGACATTTTCTGCCAGGGCATCAGTTTCAGCTGGAGTGCCCA
AATCTTTTGTTCCTGAGCCTGAGCTATGCAGAATTTCTAGTTGGGACTGTTTGGCTGTTG
GGCCCACATGGTTATTATGTCATTATTGGTAATTAGCATTTAGGCCCAGAGGATTGAGCT
TTTTGTTTTTCAGCAGAAAATCACAGCAGAGAGCAGTGCTAGCCAGCAGAGGCCCAGGCC
TAGAGTGGCTTCCTCTGCAACTGCCTCCCTCCCTAGCTGTGGGGTCCATGGCTTAGGGAG
ACCAAGACAGGTGCCCAAAGCTAGGGGCACCTGCGTAAGCAGCTCAACTGCTGTCTTCCC
CAGGCAGCATTTTACAACGTTTCTTCTCCCCGACACCCTCGGCTCTCCATGCCTGGGCCT
GGAATAGAGGGGGTCGCCATGTCCCTAGGGTATTTTCTGATGCCCAGGACTCAGGTATTA
TGCATGGAAGAAATAACCCTATGTTTAAGACTCAGGAGCCTGGGTTCAAGTCCCTTCTTA
GCTGCCGAGTTGTTGGGGCCTCATAGGCACATACACTACCTTTGCTGGGCCTCAGCTTTC
TCATCTGTCAAACAGAGATAAAGAGATAAAGACACCTGCCTGGCTTTGCTAGGGAATAGT
GTGCAAGGAGAGGGTTCTGGAGTCAGACGCACTTGGCTTCCCAACTGTACCCCTTCTTAG
TTGTGTGACATTGGGCAGGTTGCTTCACCTCTGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACCTGCTCAGTAAGGCCTTTCCTGACTCTTCTATTTAACAATGTCCCCTGTACCTAGA
AGAGTGCGCTATTCATAGTAGATACTCGATAACTATTTGTGGAGTGAATTTATGAATAAA
TGAAGCCTCTTCTCTCTGGGCTTAGCACTGTGCTGAGCACACAGTAGATTCTTAATAAAT
AATTGTGTGAGTAGTCATCATCCTCTCCATTTGCCAGATAATACTTTGGTTGGGTCAACC
CTGAAGCCTTTTTGCCTCTGACATTTTCTGCCAGGGCATCAGTTTCAGCTGGAGTGCCCA
AATCTTTTGTTCCTGAGCCTGAGCTATGCAGAATTTCTAGTTGGGACTGTTTGGCTGTTG
GGCCCACATGGTTATTATGTCATTATTGGTAATTAGCATTTAGGCCCAGAGGATTGAGCT
TTTTGTTTTTCAGCAGAAAATCACAGCAGAGAGCAGTGCTAGCCAGCAGAGGCCCAGGCC
TAGAGTGGCTTCCTCTGCAACTGCCTCCCTCCCTAGCTGTGGGGTCCATGGCTTAGGGAG
ACCAAGACAGGTGCCCAAAGCTAGGGGCACCTGCGTAAGCAGCTCAACTGCTGTCTTCCC
CAGGCAGCATTTTACAACGTTTCTTCTCCCCGACACCCTCGGCTCTCCATGCCTGGGCCT
GGAATAGAGGGGGTCGCCATGTCCCTAGGGTATTTTCTGATGCCCAGGACTCAGGTATTA
TGCATGGAAGAAATAACCCTATGTTTAAGACTCAGGAGCCTGGGTTCAAGTCCCTTCTTA
GCTGCCGAGTTGTTGGGGCCTCATAGGCACATACACTACCTTTGCTGGGCCTCAGCTTTC
TCATCTGTCAAACAGAGATAAAGAGATAAAGACACCTGCCTGGCTTTGCTAGGGAATAGT
GTGCAAGGAGAGGGTTCTGGAGTCAGACGCACTTGGCTTCCCAACTGTACCCCTTCTTAG
TTGTGTGACATTGGGCAGGTTGCTTCACCTCTGGTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               204-313, - strand, RNAz p=0.767575
               

               
               513-630, + strand, RNAz p=0.964706

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-313, - strand, RNAz p=0.767575
               

               
               513-630, + strand, RNAz p=0.964706

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               234-318, + strand, RNAmicro p=0.997904

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               234-318, + strand, RNAmicro p=0.997904

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               97-686, gnl|bosTau2|chr2 (77420116-77419522)
               

               
               97-686, gnl|Hg17|chr1 (29049289-29049808)
               

               
               97-686, gnl|Mm7|chr4 (131277058-131276501)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-686, gnl|bosTau2|chr2 (77420116-77419522)
               

               
               97-686, gnl|Hg17|chr1 (29049289-29049808)
               

               
               97-686, gnl|Mm7|chr4 (131277058-131276501)

	204-313, - strand, RNAz p=0.767575
	513-630, + strand, RNAz p=0.964706

	97-686, gnl\|bosTau2\|chr2 (77420116-77419522)
	97-686, gnl\|Hg17\|chr1 (29049289-29049808)
	97-686, gnl\|Mm7\|chr4 (131277058-131276501)