Non-Coding RNA Search

Ss1.1-Thy1-THY010092E04.5

Sequence:


               
               AGATGCCGAGTGAGTTGGGGACAGAGGCGCGCGAGGCGGCGTCCAGGTCCGACTCCCCTG
TGCAGGCACCCACCCAGGAACAGGTGACCCCGCCGCCCGAGCCACTGGGGCTCCAGGGTG
AGAAGCCGAGACAGCTGGCACGGGCTCTGCCCGACCCGGTAACAGACTCGCTCCTGGCGG
CGGCGGCGGCGGCGGAGGGGCTCGGAGCTCGCCGCCTGGGGAGGGGTCCCCACCTCCCGC
CGCCGCATCCTGAGTCTGGCCCCATCAGATGCGCTGGCTGCCTCGGGCCGGGGCCCCGGG
CTAGATGACCGTGGACAGCAGCATGAGCAGTGGGTACTGCAGCCTGGAAGAAGTTCATGG
TCGTGGATAATCCCCAGAAGTTTGCACTTTTTAAGCGGATACACAAGGATGGGCAAGTGC
TCTTCCAGAAGCTCTCGGTTGCTGACTGTCCCCTCTACCTGCGCTTGCTTGCGGGGCCTG
ACACGGATGTGCTCAGCTTTGTGCTAAAGGAGAACGAAACTGGAGAGGTGGAGTGGGACG
CCTTCTCCATCCCCGAGCTCCAGAACTTCCTAACAATCCTGGAAAAAGAAGAGCAGGATA
AAATCCAGCAAGTGCAAAAGAAGTATGACAAGTTTAGGCAGAAATTAGAGGAGACCTTAA
GAAAATCCCAGGGCAAACCTGGCTAGCTGGTCCTGCCTCCCCTTCTCCCAGTGCCCGTGG
ATTTATTTTTATTATTAATTATTATTTTGCAACAGACACTTTTTCTCAGGACACCTCTGG
TGGGTGCACATGTGCCCGCCCAGCAGTTCCAGATTTCTGAGGAACACAAGTGTGTGCACG
GGGTTGGGGCCTGCCCGCTGCCCACTGTGCCCCCTACACCGGAGCAACCCTCGTGTGAAA
GAACCACCGCATCCTCTGGCCATCCGCAAGCCTTTCACAAACCAAATAGTTGCCTCTCTG
GTCACTGAACTGGAACTCTTCACAACCAGCCATCAAAGGAAAGAGAAAACAGTTTAGAGA
TACATGTTTTCTCTGAGTTTTGTTCTTCAATTTCTCTCTTTCTTGCCAGCCATAGTACCT
TTATTTATGAGTCCAGAATGGTAGCATATTCCTTTAGCAGGTGTGAGCTAAGCCCTTGAA
AGCCGGACAGTGCTCCGAAAAGGATGGTACCGCCCTGTCTCCAGGTGCCTGTTGTTCATG
CTTAAGGGAAGGTCATAAAGCCACTGGCCCCAGACGCTCAGGTCAGGGAGCAGCAAACCT
GAGGCTGCCTGAGAGAATTCCAGAGAAGCTGCAGCTAACCTTGCCCTGATTGCCCAAGAG
TCTGTGCACGTGTAAACCCAAAGGTATATATATATATATATGTGTGTCTCTGTGGTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGCCGAGTGAGTTGGGGACAGAGGCGCGCGAGGCGGCGTCCAGGTCCGACTCCCCTG
TGCAGGCACCCACCCAGGAACAGGTGACCCCGCCGCCCGAGCCACTGGGGCTCCAGGGTG
AGAAGCCGAGACAGCTGGCACGGGCTCTGCCCGACCCGGTAACAGACTCGCTCCTGGCGG
CGGCGGCGGCGGCGGAGGGGCTCGGAGCTCGCCGCCTGGGGAGGGGTCCCCACCTCCCGC
CGCCGCATCCTGAGTCTGGCCCCATCAGATGCGCTGGCTGCCTCGGGCCGGGGCCCCGGG
CTAGATGACCGTGGACAGCAGCATGAGCAGTGGGTACTGCAGCCTGGAAGAAGTTCATGG
TCGTGGATAATCCCCAGAAGTTTGCACTTTTTAAGCGGATACACAAGGATGGGCAAGTGC
TCTTCCAGAAGCTCTCGGTTGCTGACTGTCCCCTCTACCTGCGCTTGCTTGCGGGGCCTG
ACACGGATGTGCTCAGCTTTGTGCTAAAGGAGAACGAAACTGGAGAGGTGGAGTGGGACG
CCTTCTCCATCCCCGAGCTCCAGAACTTCCTAACAATCCTGGAAAAAGAAGAGCAGGATA
AAATCCAGCAAGTGCAAAAGAAGTATGACAAGTTTAGGCAGAAATTAGAGGAGACCTTAA
GAAAATCCCAGGGCAAACCTGGCTAGCTGGTCCTGCCTCCCCTTCTCCCAGTGCCCGTGG
ATTTATTTTTATTATTAATTATTATTTTGCAACAGACACTTTTTCTCAGGACACCTCTGG
TGGGTGCACATGTGCCCGCCCAGCAGTTCCAGATTTCTGAGGAACACAAGTGTGTGCACG
GGGTTGGGGCCTGCCCGCTGCCCACTGTGCCCCCTACACCGGAGCAACCCTCGTGTGAAA
GAACCACCGCATCCTCTGGCCATCCGCAAGCCTTTCACAAACCAAATAGTTGCCTCTCTG
GTCACTGAACTGGAACTCTTCACAACCAGCCATCAAAGGAAAGAGAAAACAGTTTAGAGA
TACATGTTTTCTCTGAGTTTTGTTCTTCAATTTCTCTCTTTCTTGCCAGCCATAGTACCT
TTATTTATGAGTCCAGAATGGTAGCATATTCCTTTAGCAGGTGTGAGCTAAGCCCTTGAA
AGCCGGACAGTGCTCCGAAAAGGATGGTACCGCCCTGTCTCCAGGTGCCTGTTGTTCATG
CTTAAGGGAAGGTCATAAAGCCACTGGCCCCAGACGCTCAGGTCAGGGAGCAGCAAACCT
GAGGCTGCCTGAGAGAATTCCAGAGAAGCTGCAGCTAACCTTGCCCTGATTGCCCAAGAG
TCTGTGCACGTGTAAACCCAAAGGTATATATATATATATATGTGTGTCTCTGTGGTCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               729-836, + strand, RNAz p=0.611247

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               729-836, + strand, RNAz p=0.611247

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_182665, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_182665, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-351, gnl|bosTau2|chr16 (3075998-3076319)
               

               
               1-351, gnl|Hg17|chr1 (203118998-203119343)
               


               
               532-1168, gnl|bosTau2|chr16 (3104344-3104970)
               

               
               532-1168, gnl|Hg17|chr1 (203148551-203149212)
               

               
               532-1168, gnl|Mm7|chr1 (131082798-131082143)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-351, gnl|bosTau2|chr16 (3075998-3076319)
               

               
               1-351, gnl|Hg17|chr1 (203118998-203119343)
               


               
               532-1168, gnl|bosTau2|chr16 (3104344-3104970)
               

               
               532-1168, gnl|Hg17|chr1 (203148551-203149212)
               

               
               532-1168, gnl|Mm7|chr1 (131082798-131082143)

	1-351, gnl\|bosTau2\|chr16 (3075998-3076319)
	1-351, gnl\|Hg17\|chr1 (203118998-203119343)

	532-1168, gnl\|bosTau2\|chr16 (3104344-3104970)
	532-1168, gnl\|Hg17\|chr1 (203148551-203149212)
	532-1168, gnl\|Mm7\|chr1 (131082798-131082143)