Non-Coding RNA Search

Ss1.1-Thy1-THY010092F10.5

Sequence:


               
               AAAACCTGCGCTAAAGTTGTAAATGGAATAGAATACAAAAGTGAGGTTGGATAAATGCAT
AAATGAGGTTGTTGCACGGCTGACCCAAATTGGTCATGGAGTTTGACCCTAAAATAAGGC
CTTGGACTGGTATTCTGTGGTCCTTGGAGAATCTAGGAGCAAAAACTAGCACCTGGTGCA
GCCTGCTCTGCTCTTGCTTGTCAAACAAGTTTATACCTATGAAAGATGTTGCCTGTGATT
TTTGAATGGTGCCATATGTTACTTCTTTACCAAACAAGCAATCCACAGTATTTCTACACA
GAAAGGAGCAGATATCATAAGACTATGATATGACATCCAGGATTGTCATTGCAAAGCCTT
CATGTCTGAAATCAATGCCATGTTTAGTACTCAAACTGGTAGCAGTTCTGTTTTATGTTT
GTGAAATGGGATACATTTTAAGTCTTTTTGATAAAATTTAGTGAACAGATGTGGGTGGAA
ATTTTAAGCTGTGGACTAGTTGAAACAATTTCAGTTTGAAATCACAGTCCAAATAAAAGC
CAGCTGTGATTCATTCAGAAACATGTGGACATTTTGAGTGTTGACAATGAGGACAGACCT
TCATAAAAAATATTATTTTACAATGTGATTGTAGCAAAGCTGGCATGAATATGACAGAAA
GCCATAATATTTTGTTTATCCAAAAACAAAAACAAAAACAAAACCTACTGGCTCTTTAAA
AGAAGGTACCAGTTAAAGTGGTAACATTTAAAAATGGATGAAAGCCATATTTTGGTATCC
TAATTTGAAGTTAATTTGCTCTTGCTTTGGTGTCTTAACAGTTATACAGACAATCCTGAA
TAGACTAGAAATGATGGAAAACCCCGTATCATATGAATCTGTTAAAATAATACCCTTGTT
TTGTCTGAGCAGAAAGAGAGCAATTCTGTCTTAACGCCAAGGAGTGACTAGACTGTGAAG
GGGCATTGAGGGGTCCGCAGTAGCCCAAGGGAAACAGGAGACTTCAGCTATGGAGGGAGG
AAGCTGGGTTGCGGTGGCCACAGTGGAAGCCATGGGGGGAGCAGCAGGTGAGCAGTGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACCTGCGCTAAAGTTGTAAATGGAATAGAATACAAAAGTGAGGTTGGATAAATGCAT
AAATGAGGTTGTTGCACGGCTGACCCAAATTGGTCATGGAGTTTGACCCTAAAATAAGGC
CTTGGACTGGTATTCTGTGGTCCTTGGAGAATCTAGGAGCAAAAACTAGCACCTGGTGCA
GCCTGCTCTGCTCTTGCTTGTCAAACAAGTTTATACCTATGAAAGATGTTGCCTGTGATT
TTTGAATGGTGCCATATGTTACTTCTTTACCAAACAAGCAATCCACAGTATTTCTACACA
GAAAGGAGCAGATATCATAAGACTATGATATGACATCCAGGATTGTCATTGCAAAGCCTT
CATGTCTGAAATCAATGCCATGTTTAGTACTCAAACTGGTAGCAGTTCTGTTTTATGTTT
GTGAAATGGGATACATTTTAAGTCTTTTTGATAAAATTTAGTGAACAGATGTGGGTGGAA
ATTTTAAGCTGTGGACTAGTTGAAACAATTTCAGTTTGAAATCACAGTCCAAATAAAAGC
CAGCTGTGATTCATTCAGAAACATGTGGACATTTTGAGTGTTGACAATGAGGACAGACCT
TCATAAAAAATATTATTTTACAATGTGATTGTAGCAAAGCTGGCATGAATATGACAGAAA
GCCATAATATTTTGTTTATCCAAAAACAAAAACAAAAACAAAACCTACTGGCTCTTTAAA
AGAAGGTACCAGTTAAAGTGGTAACATTTAAAAATGGATGAAAGCCATATTTTGGTATCC
TAATTTGAAGTTAATTTGCTCTTGCTTTGGTGTCTTAACAGTTATACAGACAATCCTGAA
TAGACTAGAAATGATGGAAAACCCCGTATCATATGAATCTGTTAAAATAATACCCTTGTT
TTGTCTGAGCAGAAAGAGAGCAATTCTGTCTTAACGCCAAGGAGTGACTAGACTGTGAAG
GGGCATTGAGGGGTCCGCAGTAGCCCAAGGGAAACAGGAGACTTCAGCTATGGAGGGAGG
AAGCTGGGTTGCGGTGGCCACAGTGGAAGCCATGGGGGGAGCAGCAGGTGAGCAGTGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               70-183, - strand, RNAz p=0.604321

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-183, - strand, RNAz p=0.604321

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1064, gnl|bosTau2|chr6 (29539887-29538857)
               

               
               1-1064, gnl|Hg17|chr4 (37769260-37770895)
               

               
               1-1064, gnl|Mm7|chr5 (63553783-63555264)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1064, gnl|bosTau2|chr6 (29539887-29538857)
               

               
               1-1064, gnl|Hg17|chr4 (37769260-37770895)
               

               
               1-1064, gnl|Mm7|chr5 (63553783-63555264)

	1-1064, gnl\|bosTau2\|chr6 (29539887-29538857)
	1-1064, gnl\|Hg17\|chr4 (37769260-37770895)
	1-1064, gnl\|Mm7\|chr5 (63553783-63555264)