Ss1.1-Thy1-THY010093C10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTGTTGAGCAACTTCCTGGCACAGAGGCAAAGGAAGCTGCAGTCCTCTCCCTGGGGAA TTCATCATCTCCTGGAGAGCAGGATGTAGCCAAAGAAAAGAATCTGGAATGGAGAAAACT GTCAGAGGAGAGGCTCCAACACCAGTGCTGCAAGAGATGCTGGGTTCACAAGGTCGAGGG AGCTCCACGTTGAAGGTACCTGACAGACCATCAAATCCTGGCGGGCAAGGGCAGGGTCCT GCTCTGACCCGCCCGCCTCTGTACCTAGAACGGTGATTCTTGACGTCTCTGCCCTGCCCT GGTATCCCTCACTTCAGCTCGGCCTGCCTGCGTGGCAGGGGTAGAAGGCAGAGAAAGCCA CTTTCCCCTCGGGCAGACCCTGAGGCTGGGCCCCAGGCTTCTCTGCATGGAGCTTTGAAG CAACCATTTAAAAGCCCTGCAGAGGACTGGCTGGAGGGAGGCTGTGTTACACTGTGGTTC ACGCCGAGGGTCTGGAGTCAGGCTGCTTGGGCTGGAGTTGGTCACCCCAACGGTTCGAAC CAGCTCCGTATGTGACCTCCCAGAGGCTCGGTTTCCTCATCTGCACATTGGAGCATGAAG TGCCTGTCCTGGCAGGGTTGTCGTGAGCACTACTGAGATGAGGACCCGAACTGCTTACCG CAGAGCCTGCCCTTTGGACGCTGGACTCTCAGGAGTGGATCTCCGTGCTGACGTTAGTAA GAAGACAGCATCCAGCATCCTGACCCTTCTGTCCCTCTGAACTGCAGCTGACTTCTACAA ATCCAGTCTCCAAATGAGTCCTGTCCTAATTTATGCAAAGACATCCACGTGGGTCTATAG CCCGAGCTGTCCCGTCTTGGGATCAGGCAATGGGAGTGGAGAAAATAGGTGGGAACTTCC TGATGTCCCCCCATCCCCCAGGACTCAGGTTTGTTGACTCAGAGTGGAGGAGGAACCAGG CAGCAGGGAATGTTCAGGAGAAAGGGCCTGGCCTGCGCTCCCAAATCCTGGCACTGCCCA TTTGGAGTGATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTGTTGAGCAACTTCCTGGCACAGAGGCAAAGGAAGCTGCAGTCCTCTCCCTGGGGAA TTCATCATCTCCTGGAGAGCAGGATGTAGCCAAAGAAAAGAATCTGGAATGGAGAAAACT GTCAGAGGAGAGGCTCCAACACCAGTGCTGCAAGAGATGCTGGGTTCACAAGGTCGAGGG AGCTCCACGTTGAAGGTACCTGACAGACCATCAAATCCTGGCGGGCAAGGGCAGGGTCCT GCTCTGACCCGCCCGCCTCTGTACCTAGAACGGTGATTCTTGACGTCTCTGCCCTGCCCT GGTATCCCTCACTTCAGCTCGGCCTGCCTGCGTGGCAGGGGTAGAAGGCAGAGAAAGCCA CTTTCCCCTCGGGCAGACCCTGAGGCTGGGCCCCAGGCTTCTCTGCATGGAGCTTTGAAG CAACCATTTAAAAGCCCTGCAGAGGACTGGCTGGAGGGAGGCTGTGTTACACTGTGGTTC ACGCCGAGGGTCTGGAGTCAGGCTGCTTGGGCTGGAGTTGGTCACCCCAACGGTTCGAAC CAGCTCCGTATGTGACCTCCCAGAGGCTCGGTTTCCTCATCTGCACATTGGAGCATGAAG TGCCTGTCCTGGCAGGGTTGTCGTGAGCACTACTGAGATGAGGACCCGAACTGCTTACCG CAGAGCCTGCCCTTTGGACGCTGGACTCTCAGGAGTGGATCTCCGTGCTGACGTTAGTAA GAAGACAGCATCCAGCATCCTGACCCTTCTGTCCCTCTGAACTGCAGCTGACTTCTACAA ATCCAGTCTCCAAATGAGTCCTGTCCTAATTTATGCAAAGACATCCACGTGGGTCTATAG CCCGAGCTGTCCCGTCTTGGGATCAGGCAATGGGAGTGGAGAAAATAGGTGGGAACTTCC TGATGTCCCCCCATCCCCCAGGACTCAGGTTTGTTGACTCAGAGTGGAGGAGGAACCAGG CAGCAGGGAATGTTCAGGAGAAAGGGCCTGGCCTGCGCTCCCAAATCCTGGCACTGCCCA TTTGGAGTGATC |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 164-292, - strand, RNAz p=0.928895 | |
| 350-457, - strand, RNAz p=0.985968 | |
| 356-467, - strand, RNAz p=0.598103 | |
| 672-789, - strand, RNAz p=0.985567 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 164-292, - strand, RNAz p=0.928895 | |
| 350-457, - strand, RNAz p=0.985968 | |
| 356-467, - strand, RNAz p=0.598103 | |
| 672-789, - strand, RNAz p=0.985567 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 20-516, gnl|bosTau2|chr5 (25356688-25357189) | |
| 20-516, gnl|canFam2|chr27 (9935359-9934884) | |
| 20-516, gnl|echTel1|scaffold_147058 (228-727) | |
| 20-516, gnl|hg17|chr12 (46507077-46507599) | |
| 20-516, gnl|Hg17|chr12 (46507172-46508373) | |
| 20-516, gnl|loxAfr1|scaffold_96538 (1341-822) | |
| 20-516, gnl|mm7|chr15 (97843061-97843492) | |
| 20-516, gnl|Mm7|chr15 (97843113-97843615) | |
| 20-516, gnl|panTro1|chr10 (47492150-47492680) | |
| 20-516, gnl|rheMac2|chr11 (44895909-44896443) | |
| 20-516, gnl|rn3|chr7 (136626167-136626583) | |
| 567-953, gnl|bosTau2|chr5 (25357194-25357567) | |
| 567-953, gnl|canFam2|chr27 (9934652-9934095) | |
| 567-953, gnl|echTel1|scaffold_156234 (2428-2945) | |
| 567-953, gnl|hg17|chr12 (46508227-46508802) | |
| 567-953, gnl|Hg17|chr12 (46508378-46508761) | |
| 567-953, gnl|loxAfr1|scaffold_96538 (759-224) | |
| 567-953, gnl|mm7|chr15 (97843498-97844052) | |
| 567-953, gnl|panTro1|chr10 (47494208-47494783) | |
| 567-953, gnl|rheMac2|chr11 (44897068-44897633) | |
| 567-953, gnl|rn3|chr7 (136626613-136627145) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 20-516, gnl|bosTau2|chr5 (25356688-25357189) | |
| 20-516, gnl|canFam2|chr27 (9935359-9934884) | |
| 20-516, gnl|echTel1|scaffold_147058 (228-727) | |
| 20-516, gnl|hg17|chr12 (46507077-46507599) | |
| 20-516, gnl|Hg17|chr12 (46507172-46508373) | |
| 20-516, gnl|loxAfr1|scaffold_96538 (1341-822) | |
| 20-516, gnl|mm7|chr15 (97843061-97843492) | |
| 20-516, gnl|Mm7|chr15 (97843113-97843615) | |
| 20-516, gnl|panTro1|chr10 (47492150-47492680) | |
| 20-516, gnl|rheMac2|chr11 (44895909-44896443) | |
| 20-516, gnl|rn3|chr7 (136626167-136626583) | |
| 567-953, gnl|bosTau2|chr5 (25357194-25357567) | |
| 567-953, gnl|canFam2|chr27 (9934652-9934095) | |
| 567-953, gnl|echTel1|scaffold_156234 (2428-2945) | |
| 567-953, gnl|hg17|chr12 (46508227-46508802) | |
| 567-953, gnl|Hg17|chr12 (46508378-46508761) | |
| 567-953, gnl|loxAfr1|scaffold_96538 (759-224) | |
| 567-953, gnl|mm7|chr15 (97843498-97844052) | |
| 567-953, gnl|panTro1|chr10 (47494208-47494783) | |
| 567-953, gnl|rheMac2|chr11 (44897068-44897633) | |
| 567-953, gnl|rn3|chr7 (136626613-136627145) |