Non-Coding RNA Search

Ss1.1-Thy1-THY010094B04.5

Sequence:


               
               ATTCGGAACATCGGCGGCTGCCCGGGTGACTCGGTTATATGTCACAGAATAACATTCGAG
AATGGGACATGGAATGAGGCGACGGCCACAGCAGCCCCTAGCAGCCCCAGGCCCAGGCCC
AGCCGCCGCCGCCGCAGCAGCCGCAGCAGCAGCCCTCGCCGCCCCCGCCGCACAGAGAGG
CTCCGCAGCCATGAGGCCGGCCGTCCCAAGGCACTGCCCGTAAGCGGAACTCCAGCCGCC
GCTCCCCCTTGGCTCGTCCTGCCGCAGCGGGAAGCATGGAGAAGGCCGCCCTCTCGGGGC
GCTGACCCCGCACCGCGTCCGCGCGCACACGCCCCCCGCCGCCGCCGCGCTCCCCGCAAG
CCGCCCTCCCCACCCTGACCCCACCATGACCGGCTCGGCGGCCGACACTCACCGCTGCCC
CCACCCCAAAGGCGCCAAAGGCACCCGGTCCCGGAGCAGCCACGCGCGGCCCGTAAGCCT
CGCCACCAGCGGGGGCTCAGAGGAGGAGGACAAAGACGGTGGGGTGCTGTTTCACGTTAA
CAAGAGCGGCTTCCCCATCGACAGCCACACCTGGGAGCGCATGTGGATGCACGTGGCCAA
GGTGCACCCCAAGGGAGGCGAAATGGTGGGCGCCATCAGGAACGCCACCTTCTTGGCAAA
GGATGGAACTGAGCTGCCTGCGGCCCCTCTGCTCCTCCCCAAGCAGCTTAGCCCTGGAGG
AGCCTTCTTCCCTCCCAGAGCCACAGGCCCACGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGGAACATCGGCGGCTGCCCGGGTGACTCGGTTATATGTCACAGAATAACATTCGAG
AATGGGACATGGAATGAGGCGACGGCCACAGCAGCCCCTAGCAGCCCCAGGCCCAGGCCC
AGCCGCCGCCGCCGCAGCAGCCGCAGCAGCAGCCCTCGCCGCCCCCGCCGCACAGAGAGG
CTCCGCAGCCATGAGGCCGGCCGTCCCAAGGCACTGCCCGTAAGCGGAACTCCAGCCGCC
GCTCCCCCTTGGCTCGTCCTGCCGCAGCGGGAAGCATGGAGAAGGCCGCCCTCTCGGGGC
GCTGACCCCGCACCGCGTCCGCGCGCACACGCCCCCCGCCGCCGCCGCGCTCCCCGCAAG
CCGCCCTCCCCACCCTGACCCCACCATGACCGGCTCGGCGGCCGACACTCACCGCTGCCC
CCACCCCAAAGGCGCCAAAGGCACCCGGTCCCGGAGCAGCCACGCGCGGCCCGTAAGCCT
CGCCACCAGCGGGGGCTCAGAGGAGGAGGACAAAGACGGTGGGGTGCTGTTTCACGTTAA
CAAGAGCGGCTTCCCCATCGACAGCCACACCTGGGAGCGCATGTGGATGCACGTGGCCAA
GGTGCACCCCAAGGGAGGCGAAATGGTGGGCGCCATCAGGAACGCCACCTTCTTGGCAAA
GGATGGAACTGAGCTGCCTGCGGCCCCTCTGCTCCTCCCCAAGCAGCTTAGCCCTGGAGG
AGCCTTCTTCCCTCCCAGAGCCACAGGCCCACGTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55589298|ref|XP_514186.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55589298|ref|XP_514186.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               537-656, - strand, RNAz p=0.825553

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               537-656, - strand, RNAz p=0.825553

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-142, gnl|bosTau2|chr16 (52703065-52702924)
               

               
               3-142, gnl|Hg17|chr1 (209512280-209512439)
               


               
               209-662, gnl|bosTau2|chr16 (52702251-52701810)
               

               
               209-662, gnl|Hg17|chr1 (209513074-209513556)
               

               
               209-662, gnl|Mm7|chr1 (190532095-190531686)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-142, gnl|bosTau2|chr16 (52703065-52702924)
               

               
               3-142, gnl|Hg17|chr1 (209512280-209512439)
               


               
               209-662, gnl|bosTau2|chr16 (52702251-52701810)
               

               
               209-662, gnl|Hg17|chr1 (209513074-209513556)
               

               
               209-662, gnl|Mm7|chr1 (190532095-190531686)

	3-142, gnl\|bosTau2\|chr16 (52703065-52702924)
	3-142, gnl\|Hg17\|chr1 (209512280-209512439)

	209-662, gnl\|bosTau2\|chr16 (52702251-52701810)
	209-662, gnl\|Hg17\|chr1 (209513074-209513556)
	209-662, gnl\|Mm7\|chr1 (190532095-190531686)