Non-Coding RNA Search

Ss1.1-Thy1-THY010094B06.5

Sequence:


               
               TGTTTTTGGGAGGACTAAATAAGTTTGTATGATAAAGTATTGTAATCAGTATAACAGGCA
TTCAATAAATGTTAGCTATAACTATATATTATATAGGTCATGTAGAACAGTACATGTAAG
CTTATTGATAACTTAGGTAAAATGGAACAGACGAGACATTCATGTATAGGTGAGAAAGAT
GGAGATTGGTAGGAAATAGAAGATTTTTATAGGTAATCCATAGGAAATAATTTTATTTCA
TAATAGACTAAAGCCGTGTGTTAGAAGGACTTTGAATACGAAACAAGAAAAGTTCAAACC
ATCAACAACGTAAGGCATGTTTTCCAGAACCAATTTAGGACTATTAGTTTGTCAGTATTA
CACAGGCTGGATAGAATAGAAGAGACATTAAAGATGGAGTTATTGGCCAGTTATTGGAAA
CTTGAGTAGTTGGGTACAGAAACAAAGGTACATTTGAAATCAGTGTACCCATTTTTCTCG
TTTTTAGGTATGGTATTATGAATCTTTGCCTTTAACTCTTATTCTTTCCCTGTAGGTCTG
TTAATGGAGTATACCGAATTGGACTATATGCTCTTAAAGATATGCCAGCTGGTACTGAAC
TCACTTATGATTACAATTTTCATTCCTTCAATGTTGAAAAACAGCAACTGTGTAAGTGTG
GCTTTGAGAAATGTCGAGGAATCATTGGAGGCAAGAGTCAACGCGTGAATGGACTCACCA
GCAACAAAAGCAGCCAGCCAGTATCCACACATAAAAAGTCTTGGACGGTCAAAAGAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTTGGGAGGACTAAATAAGTTTGTATGATAAAGTATTGTAATCAGTATAACAGGCA
TTCAATAAATGTTAGCTATAACTATATATTATATAGGTCATGTAGAACAGTACATGTAAG
CTTATTGATAACTTAGGTAAAATGGAACAGACGAGACATTCATGTATAGGTGAGAAAGAT
GGAGATTGGTAGGAAATAGAAGATTTTTATAGGTAATCCATAGGAAATAATTTTATTTCA
TAATAGACTAAAGCCGTGTGTTAGAAGGACTTTGAATACGAAACAAGAAAAGTTCAAACC
ATCAACAACGTAAGGCATGTTTTCCAGAACCAATTTAGGACTATTAGTTTGTCAGTATTA
CACAGGCTGGATAGAATAGAAGAGACATTAAAGATGGAGTTATTGGCCAGTTATTGGAAA
CTTGAGTAGTTGGGTACAGAAACAAAGGTACATTTGAAATCAGTGTACCCATTTTTCTCG
TTTTTAGGTATGGTATTATGAATCTTTGCCTTTAACTCTTATTCTTTCCCTGTAGGTCTG
TTAATGGAGTATACCGAATTGGACTATATGCTCTTAAAGATATGCCAGCTGGTACTGAAC
TCACTTATGATTACAATTTTCATTCCTTCAATGTTGAAAAACAGCAACTGTGTAAGTGTG
GCTTTGAGAAATGTCGAGGAATCATTGGAGGCAAGAGTCAACGCGTGAATGGACTCACCA
GCAACAAAAGCAGCCAGCCAGTATCCACACATAAAAAGTCTTGGACGGTCAAAAGAAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61882319|ref|XP_614366.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61882319|ref|XP_614366.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               426-544, - strand, RNAz p=0.511534

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               426-544, - strand, RNAz p=0.511534

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               53-644, gnl|bosTau2|chr3 (9638020-9637407)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-644, gnl|bosTau2|chr3 (9638020-9637407)