Ss1.1-Thy1-THY010095H05.5
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AGATAATTATTTTGTCAGCCCCTTCTGCCATCCCCATACCACTTTTTAAATACAGTTTTG
TGCATCTGTTCTTTCCAGGGACTCAAAACGTATTCTGTTTCTCCCATGTTTTGATAGGCA
GTGTGTAAAAGCTAATATATGATTCATTTAAGAGCAAAACCTCGTTATGCTACATTGCGG
TATAATTTCCTCTACCGTGCTGCTTATTAAAGTAAGAAAGTACGCTATGCCAGCTTCCAG
AAGGGAGTCATTTTTGTGTTCTCCAGCTCTAATGTGCATGTGGATCCT------------
------------GAGCCAGTAGTTCTGGGGCAGAACCCGAGATTCTGCATTTCCAGGCAG
TTTCCCCGGCGATGCCTGGGCTGCTTTTTGGTCTGTAGCCCACACTTTGATCTAGACCCC
AAACCAGTAGCAGTAATGGGATGAACAGGGCCAGGGAATTGGTGTGAACATTCCTCTGGT
CATGGGCAATTTCCTTGACAGCAGTTTTTCTGTGGAAGACCCAGGACTCAGCCCCCACAG
ACATGTCCAAGCCTCATTGAAAGGCACTGCCTTCCTACCCTGGCACCTGTGAAAACATGC
TGGAAACAGGCTATAAAAAGAGAGAGACCTATAGCCAAACACCTGGTCAGCCCACAGCTG
TTCAACCAAGAGAGCACACCCTGGTTTCAACACTTCGCTGCTCCTTTACTAGAAGGCTGG
GTCTCCCAAGGCCCCATTATTTCTGAAAACCACATATAACAGATGTCCTAGGGCTGGTGG
ACTGTGAGAGGGAGCGTCACAGTCTTTACTGGAGCTTTGTCACTGCAGTCAGTAGCTCCC
TGAGAGCAGCTAAGCCTCTGTGGACCATTCCTCACCCCTACATCAAACAGATTTTTGAAA
TCAGGGCACTCAGAGTCTTTGTCTGGTGGATTTGGGTGCCAGTTGGATCCATAAAACACA
GAGTGGACTCTGTGTTGCCACACCTTCCCGTGACAGTTCTTCTGAGGGGAAAAAAGTCAC
AATGCCCTCCCAAATGATGGTGTGCCAAAGAGCAAATCCTAGAAACACTCTTCTTTTTTC
TTTTTTTGAATGTTTAAAAATCCTGGAAATGTTTGTCAAATGTAAAAGTAATGACTGTAT
TCAGAGTCCCTTGGACTCCATCTGGAATGCAAACTTTAATACAGACACCAAATTATAAAG
TGTTGAAATCTTCTTTACCATCGTTCATGCATTTTTCCCTAACGTCGCTTGCGGGGTGTT
GCTTGCCCTGGCCCAGTGACAGGTGATACAGCACTGCCCTGGAAGCACAGTCTGCCGCCA
AAGGCTCTCGCTGCTCTGCACAGTGCAGATGCAAACTTCTGATCTCCATGCATTTCAGGT
TGCTTTTCCACAGTCTGTCCAGAAAGCAAACTTCCAGACTTATTTCTGAATCCCAACCCA
GTTCTGGCAAGATGCTCGGTATGGTCATTTCAATGAGTTAAAATATCA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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AGATAATTATTTTGTCAGCCCCTTCTGCCATCCCCATACCACTTTTTAAATACAGTTTTG
TGCATCTGTTCTTTCCAGGGACTCAAAACGTATTCTGTTTCTCCCATGTTTTGATAGGCA
GTGTGTAAAAGCTAATATATGATTCATTTAAGAGCAAAACCTCGTTATGCTACATTGCGG
TATAATTTCCTCTACCGTGCTGCTTATTAAAGTAAGAAAGTACGCTATGCCAGCTTCCAG
AAGGGAGTCATTTTTGTGTTCTCCAGCTCTAATGTGCATGTGGATCCT------------
------------GAGCCAGTAGTTCTGGGGCAGAACCCGAGATTCTGCATTTCCAGGCAG
TTTCCCCGGCGATGCCTGGGCTGCTTTTTGGTCTGTAGCCCACACTTTGATCTAGACCCC
AAACCAGTAGCAGTAATGGGATGAACAGGGCCAGGGAATTGGTGTGAACATTCCTCTGGT
CATGGGCAATTTCCTTGACAGCAGTTTTTCTGTGGAAGACCCAGGACTCAGCCCCCACAG
ACATGTCCAAGCCTCATTGAAAGGCACTGCCTTCCTACCCTGGCACCTGTGAAAACATGC
TGGAAACAGGCTATAAAAAGAGAGAGACCTATAGCCAAACACCTGGTCAGCCCACAGCTG
TTCAACCAAGAGAGCACACCCTGGTTTCAACACTTCGCTGCTCCTTTACTAGAAGGCTGG
GTCTCCCAAGGCCCCATTATTTCTGAAAACCACATATAACAGATGTCCTAGGGCTGGTGG
ACTGTGAGAGGGAGCGTCACAGTCTTTACTGGAGCTTTGTCACTGCAGTCAGTAGCTCCC
TGAGAGCAGCTAAGCCTCTGTGGACCATTCCTCACCCCTACATCAAACAGATTTTTGAAA
TCAGGGCACTCAGAGTCTTTGTCTGGTGGATTTGGGTGCCAGTTGGATCCATAAAACACA
GAGTGGACTCTGTGTTGCCACACCTTCCCGTGACAGTTCTTCTGAGGGGAAAAAAGTCAC
AATGCCCTCCCAAATGATGGTGTGCCAAAGAGCAAATCCTAGAAACACTCTTCTTTTTTC
TTTTTTTGAATGTTTAAAAATCCTGGAAATGTTTGTCAAATGTAAAAGTAATGACTGTAT
TCAGAGTCCCTTGGACTCCATCTGGAATGCAAACTTTAATACAGACACCAAATTATAAAG
TGTTGAAATCTTCTTTACCATCGTTCATGCATTTTTCCCTAACGTCGCTTGCGGGGTGTT
GCTTGCCCTGGCCCAGTGACAGGTGATACAGCACTGCCCTGGAAGCACAGTCTGCCGCCA
AAGGCTCTCGCTGCTCTGCACAGTGCAGATGCAAACTTCTGATCTCCATGCATTTCAGGT
TGCTTTTCCACAGTCTGTCCAGAAAGCAAACTTCCAGACTTATTTCTGAATCCCAACCCA
GTTCTGGCAAGATGCTCGGTATGGTCATTTCAATGAGTTAAAATATCA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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4-263, gnl|bosTau2|chr15 (4325712-4325984) |
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4-263, gnl|canFam2|chr21 (7970929-7970651) |
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4-263, gnl|dasNov1|scaffold_99428 (260-4) |
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4-263, gnl|echTel1|scaffold_304707 (9256-8974) |
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4-263, gnl|hg17|chr11 (95558772-95559052) |
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4-263, gnl|Hg17|chr11 (95559445-95558875) |
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4-263, gnl|mm7|chr9 (13375950-13375677) |
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4-263, gnl|Mm7|chr9 (13375603-13375844) |
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4-263, gnl|oryCun1|scaffold_198422 (102668-102383) |
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4-263, gnl|panTro1|chr9 (97477452-97477732) |
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4-263, gnl|rheMac2|chr14 (94742025-94742304) |
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4-263, gnl|rn3|chr8 (10305411-10305142) |
| |
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278-814, gnl|bosTau2|chr15 (4326037-4326561) |
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278-814, gnl|Hg17|chr11 (95558820-95557971) |
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278-814, gnl|Mm7|chr9 (13375900-13376717) |
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832-992, gnl|bosTau2|chr15 (4326559-4326719) |
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832-992, gnl|Hg17|chr11 (95557973-95557778) |
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1057-1452, gnl|bosTau2|chr15 (4326739-4327131) |
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1057-1452, gnl|Hg17|chr11 (95557766-95556696) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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4-263, gnl|bosTau2|chr15 (4325712-4325984) |
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4-263, gnl|canFam2|chr21 (7970929-7970651) |
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4-263, gnl|dasNov1|scaffold_99428 (260-4) |
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4-263, gnl|echTel1|scaffold_304707 (9256-8974) |
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4-263, gnl|hg17|chr11 (95558772-95559052) |
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4-263, gnl|Hg17|chr11 (95559445-95558875) |
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4-263, gnl|mm7|chr9 (13375950-13375677) |
|
4-263, gnl|Mm7|chr9 (13375603-13375844) |
|
4-263, gnl|oryCun1|scaffold_198422 (102668-102383) |
|
4-263, gnl|panTro1|chr9 (97477452-97477732) |
|
4-263, gnl|rheMac2|chr14 (94742025-94742304) |
|
4-263, gnl|rn3|chr8 (10305411-10305142) |
| |
|
278-814, gnl|bosTau2|chr15 (4326037-4326561) |
|
278-814, gnl|Hg17|chr11 (95558820-95557971) |
|
278-814, gnl|Mm7|chr9 (13375900-13376717) |
| |
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832-992, gnl|bosTau2|chr15 (4326559-4326719) |
|
832-992, gnl|Hg17|chr11 (95557973-95557778) |
| |
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1057-1452, gnl|bosTau2|chr15 (4326739-4327131) |
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1057-1452, gnl|Hg17|chr11 (95557766-95556696) |
