Non-Coding RNA Search

Ss1.1-Thy1-THY010098A07.5

Sequence:


               
               TTATTGGGGCTCAACTGAGATTTGTGGGATTAATGAGAAGTTAATTCGAATCTCCGCAAA
AGCCCCACGAGCTTCCCTTTGGAGGGAACTGGGGCTCTGAGAGGTAGAGCGTGGGCACAC
AAAGCCATCAGCGGGCTGGCGGAGGTAATGCTGGCATCAGCAGGGCTGGAGGCGCAGAAG
AGTTGAGATTCACGTCGTCCCCACCCTCTGACCCTCTCTGCAGGCGCTGGGGCTGTGGAG
ACCCGGAGTCGCCACAGCTCTTACCCAGAGGGGACCGAGGAGGATGAAGGGACTGAGGAT
GAGGAGCTCAGCCCCTTCCGCGGCCGATCGCTCTCGGCGCCCCCCATCCTCTGGGCTGCA
CAGCGTTATGGCCGCGAGCTCCGGAGGATGAGTGACGAGTTCCAGGGTTCCTTCAAGGTG
AGCGCGCGCGTGGGACTGTACCCTCGAGTCTCCTCCCAATGGGCTGTCCCGTTCGAGTCC
CAGGGCCTTTCGGGATCTGAGGTCCAGGCCCCCCTCCAGAAGGCCAAGACTCCTGGCTTC
CCCAAATCCTTGAAGCGCGAGGCAGGCTGGCATCTGGGCTCCTGACTGGCCGACCCCTTT
CGGGTATCTGGGTCCTTTGGCCTCAATTTCTGAAACACTTCTTCCATTCTCAGTCTTATC
TACCAGGTGCTAGATCTACGATTCTGGCGCTTACAGAGTCCTAGGCGTCCCTTCTCCCCG
CCCCCGGCTAGGAGGGACTGGGATCTAGCCAGTTCCATTCCTAAGGGACCAAGCGATCTC
ATGCTTCATAAGGTAGTCAGGGGACCCTCGGTACAGGGCCTGCTGGGAGCTACGGCCTTT
ATCTCCCCGGGGAGTCTCACTTAGCGGTAGGATTCCGGAAGCAGAATTTAACCTTTCCTC
CTCCCACCCAGAAGGGACTTCCTCGCCCGAAGAGCGCGGGCACAGCGACGCAGATGCGGC
AAAGCCCCAGCTGGAAGCGCTTCCTCCAGTCCTGGTGGTACCGGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTGGGGCTCAACTGAGATTTGTGGGATTAATGAGAAGTTAATTCGAATCTCCGCAAA
AGCCCCACGAGCTTCCCTTTGGAGGGAACTGGGGCTCTGAGAGGTAGAGCGTGGGCACAC
AAAGCCATCAGCGGGCTGGCGGAGGTAATGCTGGCATCAGCAGGGCTGGAGGCGCAGAAG
AGTTGAGATTCACGTCGTCCCCACCCTCTGACCCTCTCTGCAGGCGCTGGGGCTGTGGAG
ACCCGGAGTCGCCACAGCTCTTACCCAGAGGGGACCGAGGAGGATGAAGGGACTGAGGAT
GAGGAGCTCAGCCCCTTCCGCGGCCGATCGCTCTCGGCGCCCCCCATCCTCTGGGCTGCA
CAGCGTTATGGCCGCGAGCTCCGGAGGATGAGTGACGAGTTCCAGGGTTCCTTCAAGGTG
AGCGCGCGCGTGGGACTGTACCCTCGAGTCTCCTCCCAATGGGCTGTCCCGTTCGAGTCC
CAGGGCCTTTCGGGATCTGAGGTCCAGGCCCCCCTCCAGAAGGCCAAGACTCCTGGCTTC
CCCAAATCCTTGAAGCGCGAGGCAGGCTGGCATCTGGGCTCCTGACTGGCCGACCCCTTT
CGGGTATCTGGGTCCTTTGGCCTCAATTTCTGAAACACTTCTTCCATTCTCAGTCTTATC
TACCAGGTGCTAGATCTACGATTCTGGCGCTTACAGAGTCCTAGGCGTCCCTTCTCCCCG
CCCCCGGCTAGGAGGGACTGGGATCTAGCCAGTTCCATTCCTAAGGGACCAAGCGATCTC
ATGCTTCATAAGGTAGTCAGGGGACCCTCGGTACAGGGCCTGCTGGGAGCTACGGCCTTT
ATCTCCCCGGGGAGTCTCACTTAGCGGTAGGATTCCGGAAGCAGAATTTAACCTTTCCTC
CTCCCACCCAGAAGGGACTTCCTCGCCCGAAGAGCGCGGGCACAGCGACGCAGATGCGGC
AAAGCCCCAGCTGGAAGCGCTTCCTCCAGTCCTGGTGGTACCGGAACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13096160|pdb|1G5J|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13096160|pdb|1G5J|B

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               293-425, - strand, RNAz p=0.959766
               

               
               492-586, - strand, RNAz p=0.918628

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               293-425, - strand, RNAz p=0.959766
               

               
               492-586, - strand, RNAz p=0.918628

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               160-425, gnl|bosTau2|chr29 (33388235-33387969)
               

               
               160-425, gnl|Hg17|chr11 (63795939-63795653)
               

               
               160-425, gnl|Mm7|chr19 (6770468-6770702)
               


               
               492-738, gnl|bosTau2|chr29 (33387830-33387590)
               

               
               492-738, gnl|Hg17|chr11 (63795518-63794555)
               


               
               889-1008, gnl|bosTau2|chr29 (33387447-33387328)
               

               
               889-1008, gnl|canFam2|chr18 (55817484-55817252)
               

               
               889-1008, gnl|dasNov1|scaffold_24834 (3321-3096)
               

               
               889-1008, gnl|echTel1|scaffold_270511 (14714-14552)
               

               
               889-1008, gnl|hg17|chr11 (63794160-63794391)
               

               
               889-1008, gnl|Hg17|chr11 (63794407-63794289)
               

               
               889-1008, gnl|loxAfr1|scaffold_46086 (15463-15700)
               

               
               889-1008, gnl|mm7|chr19 (6771483-6771256)
               

               
               889-1008, gnl|Mm7|chr19 (6771242-6771356)
               

               
               889-1008, gnl|monDom2|scaffold_491 (21067-20838)
               

               
               889-1008, gnl|panTro1|chr9 (64783052-64783283)
               

               
               889-1008, gnl|rheMac2|chr14 (10158546-10158314)
               

               
               889-1008, gnl|rn3|chr1 (209784427-209784207)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-425, gnl|bosTau2|chr29 (33388235-33387969)
               

               
               160-425, gnl|Hg17|chr11 (63795939-63795653)
               

               
               160-425, gnl|Mm7|chr19 (6770468-6770702)
               


               
               492-738, gnl|bosTau2|chr29 (33387830-33387590)
               

               
               492-738, gnl|Hg17|chr11 (63795518-63794555)
               


               
               889-1008, gnl|bosTau2|chr29 (33387447-33387328)
               

               
               889-1008, gnl|canFam2|chr18 (55817484-55817252)
               

               
               889-1008, gnl|dasNov1|scaffold_24834 (3321-3096)
               

               
               889-1008, gnl|echTel1|scaffold_270511 (14714-14552)
               

               
               889-1008, gnl|hg17|chr11 (63794160-63794391)
               

               
               889-1008, gnl|Hg17|chr11 (63794407-63794289)
               

               
               889-1008, gnl|loxAfr1|scaffold_46086 (15463-15700)
               

               
               889-1008, gnl|mm7|chr19 (6771483-6771256)
               

               
               889-1008, gnl|Mm7|chr19 (6771242-6771356)
               

               
               889-1008, gnl|monDom2|scaffold_491 (21067-20838)
               

               
               889-1008, gnl|panTro1|chr9 (64783052-64783283)
               

               
               889-1008, gnl|rheMac2|chr14 (10158546-10158314)
               

               
               889-1008, gnl|rn3|chr1 (209784427-209784207)

	293-425, - strand, RNAz p=0.959766
	492-586, - strand, RNAz p=0.918628

	160-425, gnl\|bosTau2\|chr29 (33388235-33387969)
	160-425, gnl\|Hg17\|chr11 (63795939-63795653)
	160-425, gnl\|Mm7\|chr19 (6770468-6770702)

	492-738, gnl\|bosTau2\|chr29 (33387830-33387590)
	492-738, gnl\|Hg17\|chr11 (63795518-63794555)

	889-1008, gnl\|bosTau2\|chr29 (33387447-33387328)
	889-1008, gnl\|canFam2\|chr18 (55817484-55817252)
	889-1008, gnl\|dasNov1\|scaffold_24834 (3321-3096)
	889-1008, gnl\|echTel1\|scaffold_270511 (14714-14552)
	889-1008, gnl\|hg17\|chr11 (63794160-63794391)
	889-1008, gnl\|Hg17\|chr11 (63794407-63794289)
	889-1008, gnl\|loxAfr1\|scaffold_46086 (15463-15700)
	889-1008, gnl\|mm7\|chr19 (6771483-6771256)
	889-1008, gnl\|Mm7\|chr19 (6771242-6771356)
	889-1008, gnl\|monDom2\|scaffold_491 (21067-20838)
	889-1008, gnl\|panTro1\|chr9 (64783052-64783283)
	889-1008, gnl\|rheMac2\|chr14 (10158546-10158314)
	889-1008, gnl\|rn3\|chr1 (209784427-209784207)