Non-Coding RNA Search

Ss1.1-Thy1-THY010111F01.5

Sequence:


               
               GGTTAGACAAGGCCTGGTTTTGTGGTAGGTGACTCTGCCCACCTCTGTGATCCAGCCGCT
TGCAGTATTCCGACACTTGATGCAGGGAAGGAAACCAGAGGGGTGCGTGTGACTGCACAG
GTGCCCAAGTGTGTTTACAAGGGCATCTGGTATTTATGCGTCTGACTGTACCTTTCTATT
TATGTGTGTGTGTGGTTGCATGCGTGTACCTTTGTGTCTCTGAGCCCACCTGGGCACGTA
TGTGAATCTCTGCGTGAACTAAGCTCTGCGGGCTTTGTGTGTGAGTGTGTGTGTGTGTGT
GTGCGTGCGTGCGTGCGTGCGCCTGGGTGTGTGTTTACAGAAGGACAGGTGGCTCTTGCA
GCTACACATCCCTGGCTTCTAACTCTATGACCTTCCTTCCTGGGCCCCACTTCTTTTTCC
TTGCTCGTCACCTGTTCTCAACCTCCACTCTAATTTGTTTATACCGCAGTTTTGGGGGTC
AGGCGGTTGGGCCTCTTTGCTTCTCTCAGTAGCCCTGTTTCTGCCACAGCTCCATGCACA
GTTGTCCAGCCAGTCCCCCACATGTTTATACACAACTCCCTTTCCTGGAGAACCTTCTTC
CCCCGACCCCAGTCCTGCTTCTTCAGGGTGACACCCAAGTTCCTCTTTCTCCCAAAGCTT
TTTCCTCCCCTGGGCAGTGACCCTTCCTTACAGCTTACCCGTCACCTGCTGACTGGGCAC
ACAGCATGCCCAGTCTTCCCAAAGCTTCCTAGAGGGATTGTCAAGAATGGATGAGACTTG
AAAGAAGGGCCTTGAAAGCAGCCAGGGTGTAGTGGTGTGCATTCATGCATGCATTCCAGA
GCCTTGCCCAGTGCCTGGCACACAGCTGGCCTCAGTAAATGCTGAGCANGTGAAAGGTGA
ATGACAGGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTAGACAAGGCCTGGTTTTGTGGTAGGTGACTCTGCCCACCTCTGTGATCCAGCCGCT
TGCAGTATTCCGACACTTGATGCAGGGAAGGAAACCAGAGGGGTGCGTGTGACTGCACAG
GTGCCCAAGTGTGTTTACAAGGGCATCTGGTATTTATGCGTCTGACTGTACCTTTCTATT
TATGTGTGTGTGTGGTTGCATGCGTGTACCTTTGTGTCTCTGAGCCCACCTGGGCACGTA
TGTGAATCTCTGCGTGAACTAAGCTCTGCGGGCTTTGTGTGTGAGTGTGTGTGTGTGTGT
GTGCGTGCGTGCGTGCGTGCGCCTGGGTGTGTGTTTACAGAAGGACAGGTGGCTCTTGCA
GCTACACATCCCTGGCTTCTAACTCTATGACCTTCCTTCCTGGGCCCCACTTCTTTTTCC
TTGCTCGTCACCTGTTCTCAACCTCCACTCTAATTTGTTTATACCGCAGTTTTGGGGGTC
AGGCGGTTGGGCCTCTTTGCTTCTCTCAGTAGCCCTGTTTCTGCCACAGCTCCATGCACA
GTTGTCCAGCCAGTCCCCCACATGTTTATACACAACTCCCTTTCCTGGAGAACCTTCTTC
CCCCGACCCCAGTCCTGCTTCTTCAGGGTGACACCCAAGTTCCTCTTTCTCCCAAAGCTT
TTTCCTCCCCTGGGCAGTGACCCTTCCTTACAGCTTACCCGTCACCTGCTGACTGGGCAC
ACAGCATGCCCAGTCTTCCCAAAGCTTCCTAGAGGGATTGTCAAGAATGGATGAGACTTG
AAAGAAGGGCCTTGAAAGCAGCCAGGGTGTAGTGGTGTGCATTCATGCATGCATTCCAGA
GCCTTGCCCAGTGCCTGGCACACAGCTGGCCTCAGTAAATGCTGAGCANGTGAAAGGTGA
ATGACAGGTGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               35-212, + strand, RNAz p=0.990547

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-212, + strand, RNAz p=0.990547

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               108-180, + strand, RNAmicro p=0.947405

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               108-180, + strand, RNAmicro p=0.947405

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005920, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005920, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-912, gnl|bosTau2|chr3 (10797446-10796524)
               

               
               2-912, gnl|Hg17|chr1 (153248758-153247819)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-912, gnl|bosTau2|chr3 (10797446-10796524)
               

               
               2-912, gnl|Hg17|chr1 (153248758-153247819)

	2-912, gnl\|bosTau2\|chr3 (10797446-10796524)
	2-912, gnl\|Hg17\|chr1 (153248758-153247819)