Non-Coding RNA Search

Ss1.1-Thy1-THY010113F08.5

Sequence:


               
               ATGGGAAACCAAGGGATAGAAATGGTGAATTTGGAGGGATGTTACTATAAAAAAAAAGCC
TCTGGCTGATGCTGAAAAGCCAGTGACTTCTGTCCTCGGAGTAGCTTCTGAGAAGCTGAC
TTCTCAGAAACAGCTTTATAGTTAGGTCTCCTCTCCCCAGGGATAAATAAAACTTAAGTA
GATGCCACAGATTGTGTCATCTCCCATTTAGGGAACTAGCATAAGCTTTTAACACAGCCG
AGGTTGCTCTTTCTGTGTGAGTATCCTTCCTGCCGCATTGGTAGTGGTTGCTCCCCCTGC
CCCATTAAGCCAGGGCCAGCTGCAGTGTGTTGTGTGGTGTCCTTCCCTGCTTGAGCAGTA
GGGAGTGCTCCTGCCTTGTGTGGGCCAGAGCTGTGGCTGCACTTGGCGCCTCTTGGTCTC
TTCTGGCGCCGCCCCTGTTGAGCTTCCCCCTTGGTGTCCAGACAGAGAACTGTTTGCACT
GGTTTATTTTCTTCATCTGTGTCTTCTCTTTTGCGGGGGAGGGCGAGTGTTTTAACTGGG
TTTTTGAGTGAAGCTTCTTTAATAGAAGCAGAAGCTGTCTATTCTATGGGAAATTGGGTA
AACGAAGCGGCGTAGCCCATCCTTGCCAACAGGTCGCTGTTGGATAGAGCCCACCCTGTT
TCTCTGGACCTTTATGAAGGTATTAGTCGCACTCAGCAGATAGTGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGAAACCAAGGGATAGAAATGGTGAATTTGGAGGGATGTTACTATAAAAAAAAAGCC
TCTGGCTGATGCTGAAAAGCCAGTGACTTCTGTCCTCGGAGTAGCTTCTGAGAAGCTGAC
TTCTCAGAAACAGCTTTATAGTTAGGTCTCCTCTCCCCAGGGATAAATAAAACTTAAGTA
GATGCCACAGATTGTGTCATCTCCCATTTAGGGAACTAGCATAAGCTTTTAACACAGCCG
AGGTTGCTCTTTCTGTGTGAGTATCCTTCCTGCCGCATTGGTAGTGGTTGCTCCCCCTGC
CCCATTAAGCCAGGGCCAGCTGCAGTGTGTTGTGTGGTGTCCTTCCCTGCTTGAGCAGTA
GGGAGTGCTCCTGCCTTGTGTGGGCCAGAGCTGTGGCTGCACTTGGCGCCTCTTGGTCTC
TTCTGGCGCCGCCCCTGTTGAGCTTCCCCCTTGGTGTCCAGACAGAGAACTGTTTGCACT
GGTTTATTTTCTTCATCTGTGTCTTCTCTTTTGCGGGGGAGGGCGAGTGTTTTAACTGGG
TTTTTGAGTGAAGCTTCTTTAATAGAAGCAGAAGCTGTCTATTCTATGGGAAATTGGGTA
AACGAAGCGGCGTAGCCCATCCTTGCCAACAGGTCGCTGTTGGATAGAGCCCACCCTGTT
TCTCTGGACCTTTATGAAGGTATTAGTCGCACTCAGCAGATAGTGCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-158, + strand, RNAz p=0.998041

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-158, + strand, RNAz p=0.998041

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-274, gnl|bosTau2|chr19 (36517225-36517492)
               

               
               1-274, gnl|canFam2|chr9 (24180580-24180407)
               

               
               1-274, gnl|dasNov1|scaffold_12859 (3110-3304)
               

               
               1-274, gnl|hg17|chr17 (37415040-37415242)
               

               
               1-274, gnl|Hg17|chr17 (37415322-37415051)
               

               
               1-274, gnl|loxAfr1|scaffold_34254 (10216-10412)
               

               
               1-274, gnl|mm7|chr11 (100720932-100721053)
               

               
               1-274, gnl|panTro1|chr19 (40616151-40616353)
               

               
               1-274, gnl|rheMac2|chr16 (52117249-52117449)
               

               
               1-274, gnl|rn3|chr10 (89572429-89572584)
               


               
               319-552, gnl|bosTau2|chr19 (36517570-36517803)
               

               
               319-552, gnl|Hg17|chr17 (37414965-37414717)
               

               
               319-552, gnl|Mm7|chr11 (100720863-100720647)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-274, gnl|bosTau2|chr19 (36517225-36517492)
               

               
               1-274, gnl|canFam2|chr9 (24180580-24180407)
               

               
               1-274, gnl|dasNov1|scaffold_12859 (3110-3304)
               

               
               1-274, gnl|hg17|chr17 (37415040-37415242)
               

               
               1-274, gnl|Hg17|chr17 (37415322-37415051)
               

               
               1-274, gnl|loxAfr1|scaffold_34254 (10216-10412)
               

               
               1-274, gnl|mm7|chr11 (100720932-100721053)
               

               
               1-274, gnl|panTro1|chr19 (40616151-40616353)
               

               
               1-274, gnl|rheMac2|chr16 (52117249-52117449)
               

               
               1-274, gnl|rn3|chr10 (89572429-89572584)
               


               
               319-552, gnl|bosTau2|chr19 (36517570-36517803)
               

               
               319-552, gnl|Hg17|chr17 (37414965-37414717)
               

               
               319-552, gnl|Mm7|chr11 (100720863-100720647)

	1-274, gnl\|bosTau2\|chr19 (36517225-36517492)
	1-274, gnl\|canFam2\|chr9 (24180580-24180407)
	1-274, gnl\|dasNov1\|scaffold_12859 (3110-3304)
	1-274, gnl\|hg17\|chr17 (37415040-37415242)
	1-274, gnl\|Hg17\|chr17 (37415322-37415051)
	1-274, gnl\|loxAfr1\|scaffold_34254 (10216-10412)
	1-274, gnl\|mm7\|chr11 (100720932-100721053)
	1-274, gnl\|panTro1\|chr19 (40616151-40616353)
	1-274, gnl\|rheMac2\|chr16 (52117249-52117449)
	1-274, gnl\|rn3\|chr10 (89572429-89572584)

	319-552, gnl\|bosTau2\|chr19 (36517570-36517803)
	319-552, gnl\|Hg17\|chr17 (37414965-37414717)
	319-552, gnl\|Mm7\|chr11 (100720863-100720647)