Non-Coding RNA Search

Ss1.1-Thy1-THY010114B05.5

Sequence:


               
               AAAAAAAGGAAAGGAGAGACTCAGACCGGCGCTCCCTGGGTCTGCAGGGTTGAGTTTAGA
CGCCGTGGGCCGGCTCCGCTCGGGTCCCGCTCGTGGCGTGGATTTGGCAGCAGAGGCCGG
AGCAGGCGGGCGTGCGCTTGGCCCACCGTGTCCCCGGATGCAGCTCTCAGGGCTAGGGCT
CTCGGGTGCGTGCGGGGAAGGCTTGGCACCCGACAGACTTGCAGTCCCTCCTCCCACTTG
GGGCACTGAGGCTGGCGAGCTGCCACCCGAAGAACAGAGGCTGGAACTCTCCCACCTGGG
CCACGGCGGGTCCCGGTGAGCTGTCTTGACCCTGAATCCGAAGAGTCGGCTCTTCTGATT
GGCTTAGAGCACAAACGCAGGCGAACGCTGCCCGAAACCCGCTCTTTGATTGGATTTTAA
ACGAACAGCAGAGCACGAAATAAAGAGGCCTTCAGCCATTGGGCCATTGTGTGAATCTCC
TTTTGGCTTCTCCACCGACTGAATAAGCGTCTCAGGATCTTCGTCATGAGTCTTAAATCT
GGGCCTGTCAGTTCGCCCCAGCGTTACTCGTCTTTCNGCAGGGCAAGGAGTTTACAGAGT
TCAACCAATCATATAACGCCGAGATCAGGTTGCCAGGCAGATTATGCTAATGACGCCCCG
CCTTTTATGCTGCTCCCACTCTGCGGCGGGAAGAACCACCTGGAGGTGGCGGGGGGGTTT
GATTTCCATCACCCCTAGGGAGAGAGGATCGGGGACCCGCTGATCTACCAGCTCCCCTCA
CCCAACGTCGTGCACGTCGCAGAGAGAGGCCTTTTTGTCTTTCATGAACACGAGCGTGGT
GGACAGATGACTGTCCTTCACCCCATGCTGTTCTAGGTGCCTGGGCTGCTGTCCAACAGG
GAAGGGATGGATTCCAAAGATGAGAGCTCACACGTGTGGCCTCCATCCGCAGAACACGAG
GAGAATGCCACGCAGGTGCACTTTGTTCCAGACGCTGGAACTGTGGCCCAGATTGTCTAC
ACCGATGACCAGGTCCGGCCACCACAGCAGGTGGTGTACACGGCAGATGGTGCCTCCTAC
GCATCAGTGGATGGTCCAGAGCATACACTGGTCTACATCCATCCCGTGGAAGCTGCGCAG
ACTCTGTTTACAGACCCAGGCCAGGTAGCCTACGTTCAACAGGATGCTACAGCTCAGCAG
GCCTCGTTGCCAGTGCACAACCAGGTGTTACCCTCCATGGAGGGGTGGACGGCTCCCACC
CCTTTGCTACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAGGAAAGGAGAGACTCAGACCGGCGCTCCCTGGGTCTGCAGGGTTGAGTTTAGA
CGCCGTGGGCCGGCTCCGCTCGGGTCCCGCTCGTGGCGTGGATTTGGCAGCAGAGGCCGG
AGCAGGCGGGCGTGCGCTTGGCCCACCGTGTCCCCGGATGCAGCTCTCAGGGCTAGGGCT
CTCGGGTGCGTGCGGGGAAGGCTTGGCACCCGACAGACTTGCAGTCCCTCCTCCCACTTG
GGGCACTGAGGCTGGCGAGCTGCCACCCGAAGAACAGAGGCTGGAACTCTCCCACCTGGG
CCACGGCGGGTCCCGGTGAGCTGTCTTGACCCTGAATCCGAAGAGTCGGCTCTTCTGATT
GGCTTAGAGCACAAACGCAGGCGAACGCTGCCCGAAACCCGCTCTTTGATTGGATTTTAA
ACGAACAGCAGAGCACGAAATAAAGAGGCCTTCAGCCATTGGGCCATTGTGTGAATCTCC
TTTTGGCTTCTCCACCGACTGAATAAGCGTCTCAGGATCTTCGTCATGAGTCTTAAATCT
GGGCCTGTCAGTTCGCCCCAGCGTTACTCGTCTTTCNGCAGGGCAAGGAGTTTACAGAGT
TCAACCAATCATATAACGCCGAGATCAGGTTGCCAGGCAGATTATGCTAATGACGCCCCG
CCTTTTATGCTGCTCCCACTCTGCGGCGGGAAGAACCACCTGGAGGTGGCGGGGGGGTTT
GATTTCCATCACCCCTAGGGAGAGAGGATCGGGGACCCGCTGATCTACCAGCTCCCCTCA
CCCAACGTCGTGCACGTCGCAGAGAGAGGCCTTTTTGTCTTTCATGAACACGAGCGTGGT
GGACAGATGACTGTCCTTCACCCCATGCTGTTCTAGGTGCCTGGGCTGCTGTCCAACAGG
GAAGGGATGGATTCCAAAGATGAGAGCTCACACGTGTGGCCTCCATCCGCAGAACACGAG
GAGAATGCCACGCAGGTGCACTTTGTTCCAGACGCTGGAACTGTGGCCCAGATTGTCTAC
ACCGATGACCAGGTCCGGCCACCACAGCAGGTGGTGTACACGGCAGATGGTGCCTCCTAC
GCATCAGTGGATGGTCCAGAGCATACACTGGTCTACATCCATCCCGTGGAAGCTGCGCAG
ACTCTGTTTACAGACCCAGGCCAGGTAGCCTACGTTCAACAGGATGCTACAGCTCAGCAG
GCCTCGTTGCCAGTGCACAACCAGGTGTTACCCTCCATGGAGGGGTGGACGGCTCCCACC
CCTTTGCTACCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61840103|ref|XP_597720.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61840103|ref|XP_597720.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               649-767, + strand, RNAz p=0.859144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               649-767, + strand, RNAz p=0.859144

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               291-797, gnl|bosTau2|chr5 (19256929-19257435)
               

               
               291-797, gnl|Hg17|chr11 (129378323-129377821)
               

               
               291-797, gnl|Mm7|chr9 (31182889-31183392)
               


               
               973-1140, gnl|bosTau2|chr5 (19291772-19291939)
               

               
               973-1140, gnl|Hg17|chr11 (129333018-129332851)
               

               
               973-1140, gnl|Mm7|chr9 (31218490-31218657)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               291-797, gnl|bosTau2|chr5 (19256929-19257435)
               

               
               291-797, gnl|Hg17|chr11 (129378323-129377821)
               

               
               291-797, gnl|Mm7|chr9 (31182889-31183392)
               


               
               973-1140, gnl|bosTau2|chr5 (19291772-19291939)
               

               
               973-1140, gnl|Hg17|chr11 (129333018-129332851)
               

               
               973-1140, gnl|Mm7|chr9 (31218490-31218657)

	291-797, gnl\|bosTau2\|chr5 (19256929-19257435)
	291-797, gnl\|Hg17\|chr11 (129378323-129377821)
	291-797, gnl\|Mm7\|chr9 (31182889-31183392)

	973-1140, gnl\|bosTau2\|chr5 (19291772-19291939)
	973-1140, gnl\|Hg17\|chr11 (129333018-129332851)
	973-1140, gnl\|Mm7\|chr9 (31218490-31218657)