Ss1.1-Thy1-THY010115E04.5
|
GGTACGGTCGGAATCCTCGAGCACGTGGCCTACTGGTCATCTGGCATCTAATAAGCCCAA
AATTATTTGTTCTTGGTATGATAAAGTCAGATGGCATGTCACAAGCCATTTCCAGTCTAG
TTTTCTTGAAAAGGCACATTTGTAGGAAGCACTGCCAGAGACATGGTTGTGCCTGAAATA
AAATAATTGACATCAAGGGATACTGACTTCAGAAAGAGCTGCTGAAAGCAGCAGCCAGAG
ATGCTGAGATTTTCTCGCGAGGGCTATTTGTAATCATAAGCCAGACAGGTAATTCCAGCC
TGTTCAGATTTTCTTTGGCTTGGGAGCTGCAAAGACTGTTGGACTGAGAGCAAAATCTCT
GCCCTACTGAAGCCATCTCTGCTCCCATCTGTTGATGCTTTGCTCCTGATTCATGGCAAT
GGACGGTCCTTACACGTGGTCCATTCACAGTGATGGATGGTGAGGGGATGAGTGAGGAGA
GGGTCGTGTAGTCCCCATGTGCTTCTCTACCAAGACAGGTCCAGTCTTCCTGCATTAGCT
TCCCTCTTAATGCAACTGTTCCAGACCATCAGTTGGTTTCACAGAGACTTCAGATAGCCT
GGCTGGGCTTGAAGGGTTGAGACC------------------------ACTGGAAACGAC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTACGGTCGGAATCCTCGAGCACGTGGCCTACTGGTCATCTGGCATCTAATAAGCCCAA
AATTATTTGTTCTTGGTATGATAAAGTCAGATGGCATGTCACAAGCCATTTCCAGTCTAG
TTTTCTTGAAAAGGCACATTTGTAGGAAGCACTGCCAGAGACATGGTTGTGCCTGAAATA
AAATAATTGACATCAAGGGATACTGACTTCAGAAAGAGCTGCTGAAAGCAGCAGCCAGAG
ATGCTGAGATTTTCTCGCGAGGGCTATTTGTAATCATAAGCCAGACAGGTAATTCCAGCC
TGTTCAGATTTTCTTTGGCTTGGGAGCTGCAAAGACTGTTGGACTGAGAGCAAAATCTCT
GCCCTACTGAAGCCATCTCTGCTCCCATCTGTTGATGCTTTGCTCCTGATTCATGGCAAT
GGACGGTCCTTACACGTGGTCCATTCACAGTGATGGATGGTGAGGGGATGAGTGAGGAGA
GGGTCGTGTAGTCCCCATGTGCTTCTCTACCAAGACAGGTCCAGTCTTCCTGCATTAGCT
TCCCTCTTAATGCAACTGTTCCAGACCATCAGTTGGTTTCACAGAGACTTCAGATAGCCT
GGCTGGGCTTGAAGGGTTGAGACC------------------------ACTGGAAACGAC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
37-433, gnl|bosTau2|chr23 (34608186-34608572) |
|
37-433, gnl|Hg17|chr6 (11375550-11375156) |
|
37-433, gnl|Mm7|chr13 (40833947-40833563) |
| |
|
443-625, gnl|bosTau2|chr23 (34608548-34608730) |
|
443-625, gnl|canFam2|chr35 (13943831-13944032) |
|
443-625, gnl|dasNov1|scaffold_1584 (90507-90716) |
|
443-625, gnl|echTel1|scaffold_315375 (15659-15450) |
|
443-625, gnl|hg17|chr6 (11374987-11375210) |
|
443-625, gnl|Hg17|chr6 (11375180-11374992) |
|
443-625, gnl|loxAfr1|scaffold_217597 (1018-788) |
|
443-625, gnl|mm7|chr13 (40833425-40833615) |
|
443-625, gnl|Mm7|chr13 (40833587-40833430) |
|
443-625, gnl|monDom2|scaffold_3 (98330732-98331030) |
|
443-625, gnl|oryCun1|scaffold_209819 (61481-61335) |
|
443-625, gnl|panTro1|chr5 (11651713-11651936) |
|
443-625, gnl|rheMac2|chr4 (11238483-11238708) |
|
443-625, gnl|rn3|chr17 (29272651-29272460) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
37-433, gnl|bosTau2|chr23 (34608186-34608572) |
|
37-433, gnl|Hg17|chr6 (11375550-11375156) |
|
37-433, gnl|Mm7|chr13 (40833947-40833563) |
| |
|
443-625, gnl|bosTau2|chr23 (34608548-34608730) |
|
443-625, gnl|canFam2|chr35 (13943831-13944032) |
|
443-625, gnl|dasNov1|scaffold_1584 (90507-90716) |
|
443-625, gnl|echTel1|scaffold_315375 (15659-15450) |
|
443-625, gnl|hg17|chr6 (11374987-11375210) |
|
443-625, gnl|Hg17|chr6 (11375180-11374992) |
|
443-625, gnl|loxAfr1|scaffold_217597 (1018-788) |
|
443-625, gnl|mm7|chr13 (40833425-40833615) |
|
443-625, gnl|Mm7|chr13 (40833587-40833430) |
|
443-625, gnl|monDom2|scaffold_3 (98330732-98331030) |
|
443-625, gnl|oryCun1|scaffold_209819 (61481-61335) |
|
443-625, gnl|panTro1|chr5 (11651713-11651936) |
|
443-625, gnl|rheMac2|chr4 (11238483-11238708) |
|
443-625, gnl|rn3|chr17 (29272651-29272460) |
