Non-Coding RNA Search

Ss1.1-Thy1-THY010119G03.5

Sequence:


               
               CAGGAGGAAAAAGAAATGCATTCGGTACTTACCCGGAGAAGGCCGCTGCCCCAGCCCCGT
TCCTTCCGATGACAGTGCTCTAGGCTGCCCCAAGTCCCCAGCCCCCCAGGACTCACCCTC
ATACCTCCTGCTGCCCCACTTCCCCACAGAACTGCTCGCTAGCCCTGCGGAGCCAGCGCC
TACATCACCAGGTCTCTCAGCCGCCCTCAGCCTCCCAGCCCCCTGGGCCCCTTCAGGCCT
CTCACAGCGACCTGCAGAGTACACAGGTACAGCAACCGCAATCGCAGAGAAAGGCAGCCT
AGCATGCACAGGACACACAGCTTCCTCCAGGAGCCCACTCTCTGAGAAGAGACGACAGAG
CCCCAAAGCACGTGGAAACCGGCCAGGGGCCCTGTTAACTCTCTCTCAGGGTCCCAGCCC
CAGAGAGTTCAGAGGCTGCCCAACTTCTGCCTGAACCTGGGCCATCAATTCAAACTGCTC
CAAGTAGCTGGAATCAGGTCTGTGTTGTGTCATCTGATTCAGAGCATCCCTCATGCCTCT
GGCAGACTGCATCTATTTCTACCATCTGTCTTGCTAGCCAAATGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAGGAAAAAGAAATGCATTCGGTACTTACCCGGAGAAGGCCGCTGCCCCAGCCCCGT
TCCTTCCGATGACAGTGCTCTAGGCTGCCCCAAGTCCCCAGCCCCCCAGGACTCACCCTC
ATACCTCCTGCTGCCCCACTTCCCCACAGAACTGCTCGCTAGCCCTGCGGAGCCAGCGCC
TACATCACCAGGTCTCTCAGCCGCCCTCAGCCTCCCAGCCCCCTGGGCCCCTTCAGGCCT
CTCACAGCGACCTGCAGAGTACACAGGTACAGCAACCGCAATCGCAGAGAAAGGCAGCCT
AGCATGCACAGGACACACAGCTTCCTCCAGGAGCCCACTCTCTGAGAAGAGACGACAGAG
CCCCAAAGCACGTGGAAACCGGCCAGGGGCCCTGTTAACTCTCTCTCAGGGTCCCAGCCC
CAGAGAGTTCAGAGGCTGCCCAACTTCTGCCTGAACCTGGGCCATCAATTCAAACTGCTC
CAAGTAGCTGGAATCAGGTCTGTGTTGTGTCATCTGATTCAGAGCATCCCTCATGCCTCT
GGCAGACTGCATCTATTTCTACCATCTGTCTTGCTAGCCAAATGCCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               81-240, - strand, RNAz p=0.99845
               

               
               308-423, - strand, RNAz p=0.999769

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-240, - strand, RNAz p=0.99845
               

               
               308-423, - strand, RNAz p=0.999769

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               332-454, + strand, RNAmicro p=0.991623
               

               
               99-190, - strand, RNAmicro p=0.966222

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               332-454, + strand, RNAmicro p=0.991623
               

               
               99-190, - strand, RNAmicro p=0.966222

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               308-423, BP164753 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP164753.1|), blast E-value=0, identity=99.14% 
               

               
               308-415, BP167129 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP167129.1|), blast E-value=0, identity=100% 
               

               
               308-396, LB01614.CR_O01 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT811327.1|), 
blast E-value=3e-20, identity=89.89% 
               

               
               308-396, LB01317.CR_M14 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV801479.1|), 
blast E-value=3e-20, identity=89.89% 
               

               
               308-396, LB01329.CR_G02 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV804564.1|), 
blast E-value=3e-20, identity=89.89% 
               

               
               308-396, LB029108.CR_B22 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE368632.1|), 
blast E-value=3e-20, identity=89.89%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               308-423, BP164753 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP164753.1|), blast E-value=0, identity=99.14% 
               

               
               308-415, BP167129 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP167129.1|), blast E-value=0, identity=100% 
               

               
               308-396, LB01614.CR_O01 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT811327.1|), 
blast E-value=3e-20, identity=89.89% 
               

               
               308-396, LB01317.CR_M14 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV801479.1|), 
blast E-value=3e-20, identity=89.89% 
               

               
               308-396, LB01329.CR_G02 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV804564.1|), 
blast E-value=3e-20, identity=89.89% 
               

               
               308-396, LB029108.CR_B22 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE368632.1|), 
blast E-value=3e-20, identity=89.89%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-560, gnl|bosTau2|chr7 (30866310-30865769)
               

               
               2-560, gnl|Hg17|chr5 (133509812-133510383)
               

               
               2-560, gnl|Mm7|chr11 (52210721-52210178)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-560, gnl|bosTau2|chr7 (30866310-30865769)
               

               
               2-560, gnl|Hg17|chr5 (133509812-133510383)
               

               
               2-560, gnl|Mm7|chr11 (52210721-52210178)

	81-240, - strand, RNAz p=0.99845
	308-423, - strand, RNAz p=0.999769

	332-454, + strand, RNAmicro p=0.991623
	99-190, - strand, RNAmicro p=0.966222

	308-423, BP164753 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP164753.1\|), blast E-value=0, identity=99.14%
	308-415, BP167129 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP167129.1\|), blast E-value=0, identity=100%
	308-396, LB01614.CR_O01 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb\|DT811327.1\|), blast E-value=3e-20, identity=89.89%
	308-396, LB01317.CR_M14 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb\|DV801479.1\|), blast E-value=3e-20, identity=89.89%
	308-396, LB01329.CR_G02 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb\|DV804564.1\|), blast E-value=3e-20, identity=89.89%
	308-396, LB029108.CR_B22 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE368632.1\|), blast E-value=3e-20, identity=89.89%

	2-560, gnl\|bosTau2\|chr7 (30866310-30865769)
	2-560, gnl\|Hg17\|chr5 (133509812-133510383)
	2-560, gnl\|Mm7\|chr11 (52210721-52210178)