Non-Coding RNA Search

Ss1.1-Thy1-THY010120H08.5

Sequence:


               
               AGTTTGTATCAACATGGCAGCTGCGGTGCAGCTCCCCTGCTGAAGAGGCGCCGGGACGGC
AGCGCAGCTCGCAGCGGCTCCGGTGAGGGCGGCCCGCGCGCACACGGACGCGCGGACTCG
GGGCCCTGGGGACGGCCTGCGCGTCCCGGGCTCGGCGGCCCGGCCTGGGGTCTCGGTCCA
GCGGCTGGACATGGAGGCCCAGCGCTCCTCACCTCTGTCATTCCCCAGCATCCTGCAAGA
AGAAACCCCGGGTCAGGCCCCTGCTGGACTCCCTCGAGAAACCCTGTTCCAGTCCCACGT
TCTTCCCTCCAAAGAAGCTCCTTCTCTGTCCCCCGCTGCTCCCCGGCAAGGCTCCCTACC
CCAGACTCCCAGTCCTCCCAAGCAAGAGACTTCTGGCCGAATGCCCCGTGTTCTCCAGAA
GGGACCCTCGCTCCTGTATCCTGCCACTTCCGAGCAAGAGACTCAGATCCAGGGCCCCCT
GACTCCCCAGGAAGAGACCCCATTTCCGCCGCCAGCTGCTGCTGAACGAGAGACCTCACT
TCTCTCCCACTTCACCACCACCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTTGTATCAACATGGCAGCTGCGGTGCAGCTCCCCTGCTGAAGAGGCGCCGGGACGGC
AGCGCAGCTCGCAGCGGCTCCGGTGAGGGCGGCCCGCGCGCACACGGACGCGCGGACTCG
GGGCCCTGGGGACGGCCTGCGCGTCCCGGGCTCGGCGGCCCGGCCTGGGGTCTCGGTCCA
GCGGCTGGACATGGAGGCCCAGCGCTCCTCACCTCTGTCATTCCCCAGCATCCTGCAAGA
AGAAACCCCGGGTCAGGCCCCTGCTGGACTCCCTCGAGAAACCCTGTTCCAGTCCCACGT
TCTTCCCTCCAAAGAAGCTCCTTCTCTGTCCCCCGCTGCTCCCCGGCAAGGCTCCCTACC
CCAGACTCCCAGTCCTCCCAAGCAAGAGACTTCTGGCCGAATGCCCCGTGTTCTCCAGAA
GGGACCCTCGCTCCTGTATCCTGCCACTTCCGAGCAAGAGACTCAGATCCAGGGCCCCCT
GACTCCCCAGGAAGAGACCCCATTTCCGCCGCCAGCTGCTGCTGAACGAGAGACCTCACT
TCTCTCCCACTTCACCACCACCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               375-494, - strand, RNAz p=0.712343

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-494, - strand, RNAz p=0.712343

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               175-563, gnl|bosTau2|chr4 (65516406-65516017)
               

               
               175-563, gnl|Hg17|chr7 (148590777-148590388)
               

               
               175-563, gnl|Mm7|chr6 (48004603-48004217)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-563, gnl|bosTau2|chr4 (65516406-65516017)
               

               
               175-563, gnl|Hg17|chr7 (148590777-148590388)
               

               
               175-563, gnl|Mm7|chr6 (48004603-48004217)

	175-563, gnl\|bosTau2\|chr4 (65516406-65516017)
	175-563, gnl\|Hg17\|chr7 (148590777-148590388)
	175-563, gnl\|Mm7\|chr6 (48004603-48004217)