Non-Coding RNA Search

Ss1.1-Thy1-THY010201A10.5

Sequence:


               
               AAGTCGGAGCCTCGCGGCAGCAGCGCAGCTTCTGGCCCGTCAGGGTTGCGCTGTCTTCTC
CACTCGGATCTCCGCCGGAAGCGGAGGAAACAAAAGCCTGGAGATTTGAATCTACCTGCT
TTCAAGCTAGTCATCATGATGAAACTTAGGCACAAAAATAAAAAGCCAGGTAAAGGTTCC
AAAGGCTGCAAGAAGGTAAGTTGGTTCTACCCTCAGGTAAGGTATACTCTTTGGGGGTAA
GGTCAGGAATAGGTTACTTGCCCTAGAAGAGCCCCACAAAGCCAGTAGGTGTTGAATGAC
TCCAGACAGAGCACCGCATTTGAATCAGCATAGCTGGCTTTCCCTCCCTCTCTGGGTGTC
TTCAGCAGAGAATCAGCAGCATTTATTAAGTTCTTACCACAAACCATACACTGCTTTGTG
CTTGGTTTACCTTGGTAAGGATGCCATTGTCCCATTTTTTTAGATGAAGAAACTGAACCT
CAGTGAGAAAGTTCCTAAGTTCCAGGTAGCACAGCTAAGACTTGAGTCTGTCTTATTCCC
AAGTCCCTATCGCTCATGAGGAGGAGGGAGGCTCAAATAGTTTTTGGCCCTAGCTCCTGG
ATCTCCTAGCTTAGAAAGTTGTATACAAGTAGGACTTGGCCTAGAGCAATAATTCTCAAA
TTTTAGCATGGTTAAAGTGCTCAAATTTTCACCAGCCCTCCAGAATCACCTGTAGGGTTG
GTTAAAACACAGATTGCTGGGCTCTACCCCTGAATTTCTGATTCTGTAGGTCTGTCTTGG
TATCTGATAATTGGTGTTTCTAACAAGTTACCAGGTAGTGCTACGACTGTTGTTCCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTCGGAGCCTCGCGGCAGCAGCGCAGCTTCTGGCCCGTCAGGGTTGCGCTGTCTTCTC
CACTCGGATCTCCGCCGGAAGCGGAGGAAACAAAAGCCTGGAGATTTGAATCTACCTGCT
TTCAAGCTAGTCATCATGATGAAACTTAGGCACAAAAATAAAAAGCCAGGTAAAGGTTCC
AAAGGCTGCAAGAAGGTAAGTTGGTTCTACCCTCAGGTAAGGTATACTCTTTGGGGGTAA
GGTCAGGAATAGGTTACTTGCCCTAGAAGAGCCCCACAAAGCCAGTAGGTGTTGAATGAC
TCCAGACAGAGCACCGCATTTGAATCAGCATAGCTGGCTTTCCCTCCCTCTCTGGGTGTC
TTCAGCAGAGAATCAGCAGCATTTATTAAGTTCTTACCACAAACCATACACTGCTTTGTG
CTTGGTTTACCTTGGTAAGGATGCCATTGTCCCATTTTTTTAGATGAAGAAACTGAACCT
CAGTGAGAAAGTTCCTAAGTTCCAGGTAGCACAGCTAAGACTTGAGTCTGTCTTATTCCC
AAGTCCCTATCGCTCATGAGGAGGAGGGAGGCTCAAATAGTTTTTGGCCCTAGCTCCTGG
ATCTCCTAGCTTAGAAAGTTGTATACAAGTAGGACTTGGCCTAGAGCAATAATTCTCAAA
TTTTAGCATGGTTAAAGTGCTCAAATTTTCACCAGCCCTCCAGAATCACCTGTAGGGTTG
GTTAAAACACAGATTGCTGGGCTCTACCCCTGAATTTCTGATTCTGTAGGTCTGTCTTGG
TATCTGATAATTGGTGTTTCTAACAAGTTACCAGGTAGTGCTACGACTGTTGTTCCTGGG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               155-347, - strand, RNAz p=0.767337
               

               
               428-545, - strand, RNAz p=0.726104
               

               
               649-738, + strand, RNAz p=0.99867

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-347, - strand, RNAz p=0.767337
               

               
               428-545, - strand, RNAz p=0.726104
               

               
               649-738, + strand, RNAz p=0.99867

Similar Transcript(s): 4 entry(ies)

More info

Similar Transcript(s): 4 entry(ies)

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               649-738, BP160368 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP160368.1|), blast E-value=1.99965e-42, identity=100% 
               

               
               649-738, BP172182 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP172182.1|), blast E-value=1.99965e-42, identity=100% 
               

               
               649-738, CJ011406 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ011406.1|), blast E-value=1.99965e-42, identity=100% 
               

               
               649-738, DB818356 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|DB818356.1|), blast E-value=1.99965e-42, identity=100%

Similar Transcript(s): 4 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               649-738, BP160368 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP160368.1|), blast E-value=1.99965e-42, identity=100% 
               

               
               649-738, BP172182 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP172182.1|), blast E-value=1.99965e-42, identity=100% 
               

               
               649-738, CJ011406 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ011406.1|), blast E-value=1.99965e-42, identity=100% 
               

               
               649-738, DB818356 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|DB818356.1|), blast E-value=1.99965e-42, identity=100%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               155-738, gnl|bosTau2|chrX (26723804-26724390)
               

               
               155-738, gnl|Hg17|chrX (54448494-54449098)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-738, gnl|bosTau2|chrX (26723804-26724390)
               

               
               155-738, gnl|Hg17|chrX (54448494-54449098)

	155-347, - strand, RNAz p=0.767337
	428-545, - strand, RNAz p=0.726104
	649-738, + strand, RNAz p=0.99867

	649-738, BP160368 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP160368.1\|), blast E-value=1.99965e-42, identity=100%
	649-738, BP172182 full-length enriched swine cDNA library, adult uterus Sus (dbj\|BP172182.1\|), blast E-value=1.99965e-42, identity=100%
	649-738, CJ011406 full-length enriched swine cDNA library, adult mesenteric (dbj\|CJ011406.1\|), blast E-value=1.99965e-42, identity=100%
	649-738, DB818356 full-length enriched swine cDNA library, adult thymus Sus (dbj\|DB818356.1\|), blast E-value=1.99965e-42, identity=100%

	155-738, gnl\|bosTau2\|chrX (26723804-26724390)
	155-738, gnl\|Hg17\|chrX (54448494-54449098)