Non-Coding RNA Search

Ss1.1-Thy1-THY010203D03.5

Sequence:


               
               TCATCTGGTTTTTATTACTGTGACATTTTTGGTGCAAGTTGGATTTTTCCAAAGAATTCC
CGCAGAAGTTTGAAATGTGTCCCTTGGTGTTTATGTTAACACAGATTAGCCTCACTGTTG
CCGCCAAGGAGTTGTCTGTGTCTGACACGGACGTGTCCGAGGTCTCCTGGACTGACAACG
GGACCTTCAACCTTTCAGAAGGATACACTCCACAGACAGACACTTCTGATGGTAGGCTCA
CACTTTTAGATGCTCTTGTTTTTTGAAAAATCCCATATTCCCGATTTATCCCTCCCCTAC
TTTCCCCATTGGTAACCGTAAGTTTGTTCTCTCATTCTGTGAGTCTGTTTGTGTTTTGTA
AAGTTCATTTGTACTGCTTTTTTAAGATGCCACATATAAGTGATGTCATATAACATTTGT
CTTTATATGCTCTTATTTTTATTATTATAAGCGCATGCAAAAGTATTTAGCTGCCGAAGG
GACAAACAAAATATGGTACATCCACCCAATGGAACATCACTTGGTAGAAAAACGAAGTAT
TAACACTTGTTACAAGATGGATGAACTTTGAACACCTTGTGCTAAATGCAAGAAGCCAGA
CACACAAGTCCACATATTGTGTAACTCCTTTTATATGAAATGTCCAGAATAGGCAAATCT
GTATGGACAGAAAGTAGATTAGTGACTGCCAGAGGCAGTGGTGGGATATTGTATAGCTTT
GTGAATATGTTAAAAAACTACCTCATTGTATGCTGTACAAGGGTTCATTTTATTGTCTAT
GAATTATATCCCCAAAGCTATCATTTTTTTAAGAGGATGAGAAAACAAATCTAAGCCAGT
GTCCAAATCTGCCTTTATTACAAAAACAAATAAATAATTGACAGCGAGGAGTTCCCGCTG
TGAAGCAGTGGGTTAAGAATCTGACTGCAGCTGCTCAGGTTGCAAGCTGACATTAAGATG
GTTAAATAGTAGTAAGTGATGAGACGTGTTTTTGTGCCCAAGAAGAACGCTAAGGCCATG
GCGTGTTTGTGTGCTTGTGGAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATCTGGTTTTTATTACTGTGACATTTTTGGTGCAAGTTGGATTTTTCCAAAGAATTCC
CGCAGAAGTTTGAAATGTGTCCCTTGGTGTTTATGTTAACACAGATTAGCCTCACTGTTG
CCGCCAAGGAGTTGTCTGTGTCTGACACGGACGTGTCCGAGGTCTCCTGGACTGACAACG
GGACCTTCAACCTTTCAGAAGGATACACTCCACAGACAGACACTTCTGATGGTAGGCTCA
CACTTTTAGATGCTCTTGTTTTTTGAAAAATCCCATATTCCCGATTTATCCCTCCCCTAC
TTTCCCCATTGGTAACCGTAAGTTTGTTCTCTCATTCTGTGAGTCTGTTTGTGTTTTGTA
AAGTTCATTTGTACTGCTTTTTTAAGATGCCACATATAAGTGATGTCATATAACATTTGT
CTTTATATGCTCTTATTTTTATTATTATAAGCGCATGCAAAAGTATTTAGCTGCCGAAGG
GACAAACAAAATATGGTACATCCACCCAATGGAACATCACTTGGTAGAAAAACGAAGTAT
TAACACTTGTTACAAGATGGATGAACTTTGAACACCTTGTGCTAAATGCAAGAAGCCAGA
CACACAAGTCCACATATTGTGTAACTCCTTTTATATGAAATGTCCAGAATAGGCAAATCT
GTATGGACAGAAAGTAGATTAGTGACTGCCAGAGGCAGTGGTGGGATATTGTATAGCTTT
GTGAATATGTTAAAAAACTACCTCATTGTATGCTGTACAAGGGTTCATTTTATTGTCTAT
GAATTATATCCCCAAAGCTATCATTTTTTTAAGAGGATGAGAAAACAAATCTAAGCCAGT
GTCCAAATCTGCCTTTATTACAAAAACAAATAAATAATTGACAGCGAGGAGTTCCCGCTG
TGAAGCAGTGGGTTAAGAATCTGACTGCAGCTGCTCAGGTTGCAAGCTGACATTAAGATG
GTTAAATAGTAGTAAGTGATGAGACGTGTTTTTGTGCCCAAGAAGAACGCTAAGGCCATG
GCGTGTTTGTGTGCTTGTGGAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               116-235, + strand, RNAz p=0.937686

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-235, + strand, RNAz p=0.937686

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC053326, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC053326, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-256, gnl|bosTau2|chr20 (32687010-32687264)
               

               
               1-256, gnl|Hg17|chr5 (16531005-16530746)
               

               
               1-256, gnl|Mm7|chr15 (26073046-26073291)
               


               
               421-696, gnl|bosTau2|chr20 (32687252-32687521)
               

               
               421-696, gnl|Hg17|chr5 (16530758-16530483)
               

               
               421-696, gnl|Mm7|chr15 (26073278-26073551)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-256, gnl|bosTau2|chr20 (32687010-32687264)
               

               
               1-256, gnl|Hg17|chr5 (16531005-16530746)
               

               
               1-256, gnl|Mm7|chr15 (26073046-26073291)
               


               
               421-696, gnl|bosTau2|chr20 (32687252-32687521)
               

               
               421-696, gnl|Hg17|chr5 (16530758-16530483)
               

               
               421-696, gnl|Mm7|chr15 (26073278-26073551)

	1-256, gnl\|bosTau2\|chr20 (32687010-32687264)
	1-256, gnl\|Hg17\|chr5 (16531005-16530746)
	1-256, gnl\|Mm7\|chr15 (26073046-26073291)

	421-696, gnl\|bosTau2\|chr20 (32687252-32687521)
	421-696, gnl\|Hg17\|chr5 (16530758-16530483)
	421-696, gnl\|Mm7\|chr15 (26073278-26073551)