Non-Coding RNA Search

Ss1.1-Thy1-THY010205B09.5

Sequence:


               
               TTCTCTTTCCTTTTACCTTTGGGTTGTTCGCAGATTGATTCCTGACTATGCCTGAGCCCT
CCAAGTCCGCTCCGGCCCCAAAGAAGGGCTCCAAGAAGGCGGTGACCAAGGCGCAGAAGA
AGGATGGCAAGAAGCGTAAACGCAGCCGCAAGGAGAGCTACTCGGTGTACGTGTACAAGG
TGCTGAAGCAGGTCCACCCCGACACCGGCATCTCGTCCAAGGCCATGGGCATCATGAACT
CCTTCGTCAACGACATCTTTGAGCGCATTGCCGGCGAGGCCTCGCGGCTGGCGCATTACA
ACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGGCTGCTGCTGCCCG
GGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCTGTCACCAAGTACACCAGCT
CCAAGTGAGCCAGCCTGCAGCGGAGCGACTGAACTGTGTCCATCACTTCTTGCATGAGAA
GGGATCCTTCTGAAGCCACCAGAATGATTAACCTCATCAGAGCCCTTTCAGTGACATCTA
CAGTGGACTCTCCACTTCCGCCATCTCGACAGTCCTCTGATATGTTTTTGTTGGATCTAA
AATCTTGGCGGAGGCAAATCCCTGAACACCATCCTGACTTCTTAGGATGGGATCCTTATC
CCCTTCACCTACATCAGTCTGTAGTTATTGCTTCCTTCAAGCCTAGTGTTTTGGCAGTGG
CCACACCAGGGAACACAGATTTCTACAAGCCACAACCATGACTTTAAATAATGTGGCAGT
TGTAATTTGATGGAGTTAAAAAGTATAAAAGAATATGTACCATACACTTACTACTCCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTCTTTCCTTTTACCTTTGGGTTGTTCGCAGATTGATTCCTGACTATGCCTGAGCCCT
CCAAGTCCGCTCCGGCCCCAAAGAAGGGCTCCAAGAAGGCGGTGACCAAGGCGCAGAAGA
AGGATGGCAAGAAGCGTAAACGCAGCCGCAAGGAGAGCTACTCGGTGTACGTGTACAAGG
TGCTGAAGCAGGTCCACCCCGACACCGGCATCTCGTCCAAGGCCATGGGCATCATGAACT
CCTTCGTCAACGACATCTTTGAGCGCATTGCCGGCGAGGCCTCGCGGCTGGCGCATTACA
ACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGGCTGCTGCTGCCCG
GGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCTGTCACCAAGTACACCAGCT
CCAAGTGAGCCAGCCTGCAGCGGAGCGACTGAACTGTGTCCATCACTTCTTGCATGAGAA
GGGATCCTTCTGAAGCCACCAGAATGATTAACCTCATCAGAGCCCTTTCAGTGACATCTA
CAGTGGACTCTCCACTTCCGCCATCTCGACAGTCCTCTGATATGTTTTTGTTGGATCTAA
AATCTTGGCGGAGGCAAATCCCTGAACACCATCCTGACTTCTTAGGATGGGATCCTTATC
CCCTTCACCTACATCAGTCTGTAGTTATTGCTTCCTTCAAGCCTAGTGTTTTGGCAGTGG
CCACACCAGGGAACACAGATTTCTACAAGCCACAACCATGACTTTAAATAATGTGGCAGT
TGTAATTTGATGGAGTTAAAAAGTATAAAAGAATATGTACCATACACTTACTACTCCAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5T008_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T008_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               537-710, + strand, RNAz p=0.962548

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               537-710, + strand, RNAz p=0.962548

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               7-448, gnl|bosTau2|chr3 (62459309-62458868)
               

               
               7-448, gnl|Hg17|chr6 (27914379-27914819)
               

               
               7-448, gnl|Mm7|chr13 (21120077-21120497)
               


               
               8-426, gnl|bosTau2|chr10 (69640102-69639687)
               

               
               8-426, gnl|Hg17|chr6 (27969219-27969598)
               

               
               8-426, gnl|Mm7|chr13 (22937396-22937804)
               


               
               459-823, gnl|bosTau2|chr3 (62456022-62455648)
               

               
               459-823, gnl|Mm7|chr6 (19039138-19039505)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-448, gnl|bosTau2|chr3 (62459309-62458868)
               

               
               7-448, gnl|Hg17|chr6 (27914379-27914819)
               

               
               7-448, gnl|Mm7|chr13 (21120077-21120497)
               


               
               8-426, gnl|bosTau2|chr10 (69640102-69639687)
               

               
               8-426, gnl|Hg17|chr6 (27969219-27969598)
               

               
               8-426, gnl|Mm7|chr13 (22937396-22937804)
               


               
               459-823, gnl|bosTau2|chr3 (62456022-62455648)
               

               
               459-823, gnl|Mm7|chr6 (19039138-19039505)

	7-448, gnl\|bosTau2\|chr3 (62459309-62458868)
	7-448, gnl\|Hg17\|chr6 (27914379-27914819)
	7-448, gnl\|Mm7\|chr13 (21120077-21120497)

	8-426, gnl\|bosTau2\|chr10 (69640102-69639687)
	8-426, gnl\|Hg17\|chr6 (27969219-27969598)
	8-426, gnl\|Mm7\|chr13 (22937396-22937804)

	459-823, gnl\|bosTau2\|chr3 (62456022-62455648)
	459-823, gnl\|Mm7\|chr6 (19039138-19039505)