Non-Coding RNA Search

Ss1.1-Thy1-THY010205C10.5

Sequence:


               
               CTGGTCCGGTCCGGAATCCTCAGCACGTGGCCTACTGGGCTGGTGGTGGAGAGCGTGGAG
AGAATCTTCCGAAGCTTCCCGAGGGGGGATGCTGGGGAGGTAACGTCCCTGCTGAAGCTG
AACAAGAAGCTGGCACGGAGCGTGGGGCACATCTTTGAGATGGACGATAACGACAGCCAG
AAGGAAGAGGAGATCCGCAAATACAGCATCATTTATGGCCGCTTTGACTCCAAGCGGCGG
GAGGGCAAGCAGCTCAGCCTACATGAGCTGACCATCAATGAGGCTGCTGCCCAGTTCTGC
ATGAGGGACAACACGCTCTTACTGCGGAGGGTGGAGCTCTTCTCCCTGTCCCGCCAGGTG
GCCCGAGAGAGTACCTACCTGTCCTCCTTGAAGGGCTCCAGGCTTCACCCCGAAGAATTG
GGAGGCCCCCCACTGAAGAAACTGAAACAAGAGGTTGGTGAGCAAAGTCGCTCTGAAATC
CAGCAGCCTCCCTCAGGCCCTGAGTCCTATGCACCCCCATACCGCCCCAGCCTGGAGGAA
GACAGTGCCAGCCTGTCCGGGGAGAGCCTGGATGGACACTTGCAGGCTGTGGGGTCATGC
CCAAGGCTGACGCCGCCCCCTGCTGACCTGCCTCTGGCATTGCCAGCCCATGGGCTGTGG
AGCCGCCACATCCTGCACAGACACTGATGGATGAGGGGCTGCAGCTAGCCCGCCTCGTCT
CCCATGACCGCGTGGGCCGCCTCAGCCCCTGTGTGCCTGCGAAGCCGCCTCTAGCAGAGT
TCGAGGAGGGGCTGGTAGACCGATGCCCTGCGCCGGGACCCCATCCCGCTCTGGTGGAAG
GTCGGAGGAGCAGCGTCAAAGTGGAGGCTGACGCCAGCCGGCAATGAGGGCGGGACTGCT
GTCCTCAGACCGCGGAGCCTGGGCTCCCGGGTCACACAACCCCTCGACTCCGCGTACCTG
GCACCTAGTCACAGCCCTGGATCCTTCCGCTGCCCTTCTCCTGCCTCCCCACCGGCCCCA
TGGGCATAGAACTATGGGGCTTCAAGCAATAACGAGCAGGGGCCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTCCGGTCCGGAATCCTCAGCACGTGGCCTACTGGGCTGGTGGTGGAGAGCGTGGAG
AGAATCTTCCGAAGCTTCCCGAGGGGGGATGCTGGGGAGGTAACGTCCCTGCTGAAGCTG
AACAAGAAGCTGGCACGGAGCGTGGGGCACATCTTTGAGATGGACGATAACGACAGCCAG
AAGGAAGAGGAGATCCGCAAATACAGCATCATTTATGGCCGCTTTGACTCCAAGCGGCGG
GAGGGCAAGCAGCTCAGCCTACATGAGCTGACCATCAATGAGGCTGCTGCCCAGTTCTGC
ATGAGGGACAACACGCTCTTACTGCGGAGGGTGGAGCTCTTCTCCCTGTCCCGCCAGGTG
GCCCGAGAGAGTACCTACCTGTCCTCCTTGAAGGGCTCCAGGCTTCACCCCGAAGAATTG
GGAGGCCCCCCACTGAAGAAACTGAAACAAGAGGTTGGTGAGCAAAGTCGCTCTGAAATC
CAGCAGCCTCCCTCAGGCCCTGAGTCCTATGCACCCCCATACCGCCCCAGCCTGGAGGAA
GACAGTGCCAGCCTGTCCGGGGAGAGCCTGGATGGACACTTGCAGGCTGTGGGGTCATGC
CCAAGGCTGACGCCGCCCCCTGCTGACCTGCCTCTGGCATTGCCAGCCCATGGGCTGTGG
AGCCGCCACATCCTGCACAGACACTGATGGATGAGGGGCTGCAGCTAGCCCGCCTCGTCT
CCCATGACCGCGTGGGCCGCCTCAGCCCCTGTGTGCCTGCGAAGCCGCCTCTAGCAGAGT
TCGAGGAGGGGCTGGTAGACCGATGCCCTGCGCCGGGACCCCATCCCGCTCTGGTGGAAG
GTCGGAGGAGCAGCGTCAAAGTGGAGGCTGACGCCAGCCGGCAATGAGGGCGGGACTGCT
GTCCTCAGACCGCGGAGCCTGGGCTCCCGGGTCACACAACCCCTCGACTCCGCGTACCTG
GCACCTAGTCACAGCCCTGGATCCTTCCGCTGCCCTTCTCCTGCCTCCCCACCGGCCCCA
TGGGCATAGAACTATGGGGCTTCAAGCAATAACGAGCAGGGGCCTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26330129|dbj|BAC28803.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26330129|dbj|BAC28803.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-159, + strand, RNAz p=0.517043
               

               
               661-777, - strand, RNAz p=0.92781

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-159, + strand, RNAz p=0.517043
               

               
               661-777, - strand, RNAz p=0.92781

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               41-271, gnl|bosTau2|chr5 (32588641-32588411)
               

               
               41-271, gnl|Hg17|chr12 (55771822-55772052)
               

               
               41-271, gnl|Mm7|chr10 (127165879-127165649)
               


               
               586-777, gnl|bosTau2|chr5 (32587021-32586829)
               

               
               586-777, gnl|Hg17|chr12 (55773456-55773648)
               

               
               586-777, gnl|Mm7|chr10 (127164311-127164119)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-271, gnl|bosTau2|chr5 (32588641-32588411)
               

               
               41-271, gnl|Hg17|chr12 (55771822-55772052)
               

               
               41-271, gnl|Mm7|chr10 (127165879-127165649)
               


               
               586-777, gnl|bosTau2|chr5 (32587021-32586829)
               

               
               586-777, gnl|Hg17|chr12 (55773456-55773648)
               

               
               586-777, gnl|Mm7|chr10 (127164311-127164119)

	41-159, + strand, RNAz p=0.517043
	661-777, - strand, RNAz p=0.92781

	41-271, gnl\|bosTau2\|chr5 (32588641-32588411)
	41-271, gnl\|Hg17\|chr12 (55771822-55772052)
	41-271, gnl\|Mm7\|chr10 (127165879-127165649)

	586-777, gnl\|bosTau2\|chr5 (32587021-32586829)
	586-777, gnl\|Hg17\|chr12 (55773456-55773648)
	586-777, gnl\|Mm7\|chr10 (127164311-127164119)